Syngnathus scovelli (Gulf pipefish): 125993610
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Entry
125993610 CDS
T08785
Symbol
vcp
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04137
Mitophagy - animal
sscv04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
125993610 (vcp)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
125993610 (vcp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125993610 (vcp)
03009 Ribosome biogenesis [BR:
sscv03009
]
125993610 (vcp)
04131 Membrane trafficking [BR:
sscv04131
]
125993610 (vcp)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sscv04147
]
125993610 (vcp)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
125993610 (vcp)
Ribosome biogenesis [BR:
sscv03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
125993610 (vcp)
Membrane trafficking [BR:
sscv04131
]
SNARE
SNARE associated proteins
Others
125993610 (vcp)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
125993610 (vcp)
Exosome [BR:
sscv04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
125993610 (vcp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
TIP49
AAA_22
AAA_14
NPHP3_N
RNA_helicase
Vps4_C
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
IstB_IS21
ATPase_2
AAA_18
AAA_7
ATPase
ABC_tran
DUF815
AAA_24
NB-ARC
TsaE
ResIII
Sigma54_activat
NACHT
SLFN-g3_helicase
Viral_helicase1
KAP_NTPase
Zot
Motif
Other DBs
NCBI-GeneID:
125993610
NCBI-ProteinID:
XP_049618260
LinkDB
All DBs
Position
3:17046553..17053968
Genome browser
AA seq
806 aa
AA seq
DB search
MASGGEAKNDDLATAILKQKNRPNRLIVDESINEDNSVVSLSQTKMDELQLFRGDTVLMK
GKKKRETVCIVLSDDTCSDEKVRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDMFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIRREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFKWALSQSNPSALRETVVEVPNITWEDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNVGDGGGAADRV
INQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRMSILKAN
LRKSPISKDVNLDYLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRERERQTNPLAM
EVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPNSTTGG
SGPSHSTGGSGTGPVFNEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgggaggggaagcaaagaatgatgacttagccactgcaattctgaaacagaag
aacagacccaacagactcattgtggatgagtctattaatgaagacaacagtgtcgtgtct
ctctctcagaccaagatggatgagctgcagctcttccgtggcgacacagtgctgatgaag
ggcaaaaagaaacgtgagactgtgtgcattgtattatcggatgatacatgctctgatgaa
aaggttagaatgaacagggtggtccgcaacaacttgagggtccgactgggtgatgtcatc
agcattcaaccatgtcctgatgtaaagtatggaaagaggatccatgtcctaccaatagat
gacacagtcgagggaatcactggcaacctgtttgaggtttatctcaagccatactttctg
gaggcttacaggcccattcgcaaaggtgatatgttcctggtccgaggaggcatgcgtgct
gtggaattcaaagtggtggaaactgatccttccccctactgcatcgttgctccagacact
gtcattcactgtgagggtgaaccaatcaggagagaggatgaagaggagtctttgaatgag
gttggctacgatgacattggtggagtgaggaagcagctggctcagatcaaagaaatggtg
gagctcccgcttaggcaccctgcactttttaaggccataggtgtcaagccccctcgtgga
atccttctctatggaccccctggaactggaaagaccctgattgccagggctgtggccaat
gaaacaggagcctttttctttctgatcaatggccctgagataatgagcaagctggctgga
gaaagcgagagtaatttaaggaaagcctttgaagaagcggagaaaaatgctcctgccatc
atcttcattgatgagcttgatgctattgctccaaagcgagagaagactcacggagaggtg
gagaggcgcattgtgtcgcagctgctgactctgatggatggcctcaaacagagagctcat
gtcatcgtcatggccgccacaaacagaccaaacagtatcgacccagctctgaggagattt
ggtcgttttgatcgggaagttgacattggcattccagatgccactggcagacttgagatt
ctccagattcacaccaaaaacatgaagctggctgatgatgtggacttggaacaggtagcc
aatgagacccatggtcacgtgggtgcagacctggctgccctctgctctgaggcggcattg
caggccatcagaaagaagatggacctgatcgatctggaggacgagaccattgatgcggaa
gtcatgaattctctcgccgtcaccatggatgacttcaagtgggctctgagccagagcaac
ccgtcagctctcagagagaccgttgttgaggttcccaacattacttgggaggatatcggt
ggtctggaagatgtcaagagagagctgcaagagttagtacagtacccagtggagcaccca
gacaagttcctcaagtttggcatgaccccatccaagggtgtgctcttctatgggcctcct
ggttgcggtaaaacactcctggccaaagctatcgccaatgagtgccaggcaaatttcatc
tctatcaaaggaccagagttgctcaccatgtggtttggagagtctgaggcaaacgtcagg
gagattttcgataaggctcgtcaagcagctccctgcgttctcttctttgacgagctggac
tccatagcgaaggctcgcggcggcaatgtgggagacggcggtggagcggctgaccgcgtc
atcaaccagatcctgacagagatggacggcatgtccagcaagaagaacgtcttcatcatc
ggcgccacgaacagacccgacatcatcgaccctgccatcctgagacccggacgtctggat
cagctcatctacatccccctgcctgacgagaagagccgaatgagcatcctcaaggccaac
ctccgcaagagtcccatcagcaaggatgtgaatctggactacctggcgaagatgaccaat
ggcttctctggagctgacctcacagagatctgccagcgggcatgtaaactggccatcagg
gagagcattgagaacgagatccgcagagagagggagaggcagacaaatcctttagccatg
gaggtggaagaggatgacccagtgcctgagattaggaaggaccattttgaggaggccatg
cgattcgcccgccgctccgtcagcgacaatgacatccgcaaatacgagatgtttgcacag
acgctgcagcagagtcgtggcttcggcagctttaggttccctaatagtaccacaggtggc
agtggtccaagccacagcacaggaggaagtggcacaggtcctgttttcaatgaagataac
gacgatgacctttatggataa
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