Syngnathus scovelli (Gulf pipefish): 125993716
Help
Entry
125993716 CDS
T08785
Name
(RefSeq) dmX-like protein 1 isoform X1
KO
K24155
rabconnectin-3a
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
125993716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125993716
Membrane trafficking [BR:
sscv04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
125993716
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
125993716
RAVE complex
125993716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
WDR55
Beta-prop_WDR3_2nd
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
EIF3I
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_VPS8
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
125993716
NCBI-ProteinID:
XP_049618493
LinkDB
All DBs
Position
3:20073557..20103758
Genome browser
AA seq
3060 aa
AA seq
DB search
MNLHQVLTGAVNPGDNCFSVGSVNNVPFTAYASGCDVVILGSDFERVQIIPGAKHGNIQV
GCVDCSLQGGQIAASYGSIVCIFEPVQHPDQKDTSLTTLNCQWQKTGQFVLQSMVHNLAW
HPKGSMLLTGSSSLQLWSHFDAEGGKQAQINDSHCAWRCIWQSKTASPVSLMKFSPDGEF
FATAGQDDCLVKVWYSTSKWKSGSFRLLMPPESGVDSQGEISFSFVYLAHPRSVIGFSWR
KTSKYMPRGSVCNVLLTSCKDSVCRLWAETLLPADSLLAGHHGNQHSDAQRCASSSSRIC
NGRTQAGTAQEPAFFRDAPQPSLSGCLSYNQNRHSNHKKSGDNLPHANALCHFHIAASIN
PATDIPLLPSISSLSAGEDEEPGGLFIVHWLNNKELHFTLAMEVFLQQFRGSLEQQNDCS
QQELSNEDNYDDEVASKPSDPQGPDVMEPHFAAVEHHVDVLLDEWNKGADMLFSIHPMDG
SLLVWNVDWLDEYHPGMFRQAQVSFVSRIPVAFPAGDAISLSHSVVMYACNKNVDLAIQH
GRQRPPGNTLPQNKSALISYGRQVKVAPCSSLRLSIFTPNVLMISKHDDGSLNQWGVSFA
EDSAFSTVLSVSHKSRYCGHRFHLNDLACHSVLPLLLTTSHHNALRSPEVDSILAPPEVS
SGSRGSRSSRLSLGSVSQDPNAIYSELILWRVDPVGPLSLSGGVSELARINSLHASAFAN
VAWLPTLIPSSCLGAYCNSPSACFVASDGHSLRLYQAVIEAKKLLSELSNPEISKYVGEV
FNIVSQQSTAKPGCIIELDAVTDFQGKETQLLHVFEEDLILGNERPGNWQEMTDSSRSGH
DKPTFAASFFLVVVELTPSGQSLLQMWHLHLAAKPVTMDETLSPRDAPTAASTSRSQFNF
ETFSSPIIQKSKPCTSNLQSACRLGLTTQRLYSQELPLPVGVEAISVTPSAGHLSASCSL
PAGRVPYLLATSCSDGKVRFWRCNVTGSETCGNDKLVYQWEEWALLVEETLPNCSAVSVP
GRPVQVSCCHTGRMAVAYRHTTPDTPLNLTPQLNSHTLLTFPPALASSPYLYHNNITPSV
TVQQSPNASPGLSLASAREQLVYIAIFQCESTGGSQWILEQTIVLDKTDVSNASSPDLSL
PNEHCLGSTHKSSVHLDWVSQEDGSHVLTVGIGTKIYMFGRLSGKPPELCLTSDGSRDQS
ASRLVLLRSVDLVSSVEGSPPIPVSLSWVRDGILVVGMDCEMHVYSQWQPPAPPKPNAAI
GQDTDICSSVSSIVSAVRQSQEDGLSLGPPTSLLAPPKKALTRSMMSLAQKLSGKRTAYD
LPLEMEDSGLFEAAHQLFPTLPQYHPVQLLELMDLGKVHRAKAILSHLVKCIAGEVVALK
DNTANPEKRVRSRTISAGGSTARERKMFGKDENSTPDYTEISSIPPLPLYALLASDEDTP
SKPEKVGSVSGDSGHGSSHTDAYDELFHTPSIADLDPLEQDEQEEAGNKVIDLSQYSPTY
FGPEHAQVLSSSLLHSSLPGLTRMEQMSLMALADTIATTSTDLKDNQDRSKGGETLDDCG
LKFLLAVRLHTFLSTSLPLAHRAQLLRQGLSTCHYAWAFHSEAEEELLHMLPALHQGEPT
WPELRSMGVGWWLRSTNKLRRCIEKVAKATFQRSNDPLDVAIFYLAMKKKAVVWGLYRSQ
KNAKMTEFFRNNFSEDRWRKAALKNAFSLLGKQRFHHSAAFFLLAGSLKDAVEVCLEKLQ
DLQLALVISRLYESEFETASTYKKILQRHVLGHDKQIPMHPDPFLRSMAHWVLEEYSKAL
DTLLEQTASKTKSGSSDHGSTSASNAGVFNFYTFLCTHPLLLRRHFGSSNKAKVALTAEG
RKVDSISLDERRLFFTAAYDHLQAGCPMLALEVLSKMPKVRKSSKVNRESPELSAGSKSG
PTSERDWSEPALNGYESGGGSLSNSRSDSVLSFDWSQPSLTHPDEPLELKWDSDRDDEEE
QESKSGKSSRTVHNSNVFHDSMLSTMEAAISEDSEDDDADFIHPSDDVLATQLKFTACLK
ILTNELRTLSTGYELDGGKLRYQLYQWLEREVVTLQHCCSYKPCLAEVSTLEDVQSAGLV
EDERAPSPCSDSQRSRRHWLKSNQPLLRMFLSYCSLYGSHGGGLASVRMELILLLQESHQ
DNGSPSAMATCCQHTSIPLLMACTANMKTVVANPIVYLTNLTHDILQTINALNSPPHPDF
VHNEIYVMHTLAASLSACIYQCLCDGHYSHMNNFTGMVYQSVLLSQKQQARAASIDGSVQ
PNTSPAQWPGIASLIRLLSSAGDESQPGLAVLLCEILTAVYLSLFVHGMATHSSNELFRI
MAHPLSSNLWVTVFGGGARTPVVEKANSPAKTPPPASPGTDVADKKPRRFRLLSSRSGSK
EDSSIDKDPPSSPKSEPVVDQEAASIFKECFVPPELSIWDYLIAKPSLPPSDNRVQYDSE
ESQGSEDEEEEEDEYDDIFDPNSPKKEHTNYNSYSWCLMRLAMVQLVLVNLKSFYPIAGY
DLLDLPGASPLCHSVLKTLQRWEQVLQKRLEIFGGPPSKYISTHFQEEAITPGPALLRHK
ALFEPSNTPFRTSHHSALPVKRLWQFLVKQDEVQETFIKNIFTKKHDAGELVEDQTDMKC
SGMDETGNHQTASDLGCPGGKARIIHKESDIITAFAINKANRNCLVMASTHDIQELDVSS
ILATQILTWIDDEEVETKGVGTDDFLVVHTHDDFISLHGTTPYTRSSPGTPINMPWLGGH
QTGRGASVMIKRNINNVRRMTSHPTLPYYLTGAQDGSVRMFEWGHSQQIICFRSPGNSRV
TRIRFNHQGNKFGIVDADGGLSLWQTNTSGAAPKPYLTLQCHNKTAHDFVFVGSSSLIAT
AGLSTDNRNVCLWDTLVTPMNSLVHAFCCHESGATVLLMAPRQQLLITGGRKGWISVLEL
PHRHQRQSFQAHDSPVKALAVDPTEDCFISGSAEGSLKMWNLATQCLLYCFPNEHARQSL
FRNLGTGVMQVEFGPANHIFSCGADGTMKMRIMPNRFSVNNNNTQQHQHGNLKSDVKFIL
NT seq
9183 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttcatcaggtcctcacaggggccgttaaccctggggacaattgtttctctgtc
gggagtgtcaacaatgtgccattcacggcctatgcttctggttgtgacgtggtcattttg
ggcagtgactttgaacgagtgcagatcattccaggggccaaacatggaaatatccaggtg
ggatgtgtcgactgctcgctgcagggaggacagattgcagcttcctatggaagcatcgta
tgcatttttgagccagttcagcatcccgatcaaaaagacacgtcgctgacaacgttgaac
tgccaatggcagaagactggccagtttgttttgcagtctatggtgcataacctggcgtgg
caccccaaagggagcatgcttttaacgggctccagttccctgcagttatggtctcatttt
gacgctgaaggaggaaagcaggcacaaataaatgacagtcattgtgcttggaggtgtatc
tggcaaagcaagacagcctctccagtcagtctgatgaagttctctcctgatggagaattc
tttgctactgcagggcaggatgactgtctagtgaaagtgtggtacagtacgagtaagtgg
aagtctggaagtttcagacttctcatgcctccagaatccggtgtggactcccagggagag
ataagcttttcctttgtgtacctggcccatccacgttccgttattggcttttcctggagg
aagaccagcaagtacatgccacggggttcagtgtgtaatgtcctgctcaccagctgtaag
gacagtgtgtgtcggctctgggccgagacactgttgccggcggacagcctcctcgcgggt
caccatggtaaccagcacagcgacgctcaaagatgtgccagctcttccagcaggatctgc
aatgggagaacgcaagcagggacagcacaggaacctgcttttttccgggatgcgccacag
ccctcgctctccggctgcctgtcctacaaccaaaaccgacactccaaccacaagaagagc
ggcgataaccttccccacgccaatgcgctctgtcactttcacatagcggccagcatcaac
cctgccacagacattccactgcttccctccatatcgtccctgagtgccggggaggatgag
gagccaggaggtcttttcattgtccactggctgaacaacaaagagcttcacttcacctta
gctatggaagtgttcctgcaacagtttcgcggcagcctggagcaacagaacgattgctct
cagcaagagctcagcaatgaagacaattatgacgatgaagtggcgagcaagccgagtgac
cctcaaggccccgatgtcatggagccccactttgcagcagtggagcaccacgtggacgtg
cttttggacgagtggaacaaaggggcagacatgttgttcagcatccatcccatggacggc
tctctgttggtctggaatgtggactggctagatgaatatcatcccggaatgtttagacaa
gctcaggtgtcctttgtgtcccgtatccccgtggcctttcccgcaggggacgccatctcc
ctcagtcacagtgtggtcatgtacgcttgcaacaagaacgtggatttggccatccaacac
ggcagacaacgaccacccgggaacacgttgccccaaaataaatcggcgctcatcagttat
ggccgtcaagtgaaagtggcaccgtgcagcagtcttaggttgagcattttcactcccaac
gtgctgatgatatccaagcatgatgacggctccctcaaccagtggggggtgagttttgcg
gaagactccgctttctccacggtgctcagtgtgtctcacaagtccaggtactgcggccac
cgcttccacctaaacgacctggcgtgtcactctgtattgccgctacttctcaccacctca
caccacaacgccttgcgatcccctgaggtggacagcatcctcgccccgccagaggtctcc
tccggttcccgcggctcacggtccagccggttgtcccttggtagcgtttcgcaggatcca
aacgcaatctacagcgagctgattttgtggagggttgaccccgtggggccgctatccctg
tccgggggagtgtctgagttggcccggatcaattctcttcatgcctcagcgtttgctaac
gtcgcctggctgcccacactcatccccagcagttgtttaggtgcttattgtaactctccc
agcgcctgctttgtcgcaagtgacggccactcactcaggctttatcaggccgttattgaa
gccaagaaactcctcagcgagctctccaatcctgagatatcaaaatatgtcggcgaggtg
ttcaacatcgtcagtcagcagtcgacagccaaaccggggtgtatcattgagctggatgcc
gttaccgactttcagggaaaggagacccagctcttgcacgtatttgaggaggatctaata
ctcggcaacgagagaccaggcaactggcaggaaatgacggattcatctcgttccggtcat
gacaagcccacttttgctgcaagtttttttctcgtggttgttgagttaaccccaagtggc
cagtccctcctacagatgtggcatcttcatctcgcggctaaacccgtcaccatggacgag
actctctccccgcgagacgcccccacagctgcttcaaccagccgctctcagtttaacttt
gaaaccttcagctcgccgataattcagaagagtaaaccctgcacgtccaatctgcagagc
gcatgtcgcctcggcctcaccacccagagactctacagccaagaattgcctttgccagtc
ggggtggaggccatcagcgttacgccctcagcaggtcacctcagtgcatcgtgttctctg
ccagctggccgtgtgccatacctcctcgcgacttcctgttctgacggaaaggtgcgcttc
tggaggtgtaacgtcacgggatccgagacttgcggcaatgacaagctggtgtatcagtgg
gaggagtgggctctactggtggaagagacgcttcctaattgcagtgccgtgagcgtgcca
ggtcgtcccgttcaggtcagctgctgtcacacgggacgaatggcagtcgcctacaggcac
accacgccggacacacctctgaacttgacacctcagctaaactctcacacgcttctgact
ttccctcctgccctggcttcctcaccttatttgtaccacaacaacatcactccaagcgtg
actgtgcagcaaagcccaaatgcctctccgggcctttccttagcaagcgccagagaacag
ctggtctacatcgccatcttccagtgcgaatccacaggtggttcacagtggattctagag
cagacgatagtcttggataaaactgatgttagcaacgcctcgtctccggatttatctttg
cctaacgagcactgcctcggttctactcataagagttcggttcacttagactgggtctcc
caagaagatgggtcacatgttctgactgttggcatagggacaaagatttatatgtttgga
cgtctgtctggaaagcctcccgagctttgcctgacatctgacggcagccgagaccaaagc
gcgtcgcgcctggttctgcttcgatctgtcgacctggtctcctctgttgaaggctcaccg
cccatcccggtctccctctcgtgggtacgcgatggcatcttggtcgtaggtatggactgt
gagatgcatgtctactcccagtggcagcccccagcaccgcccaaacccaatgccgcaatt
ggccaggacacggacatctgcagcagcgtgtcctccatcgtctcagccgtgagacaaagc
caagaggatgggctcagtcttgggcctcccacatccttactggcccctcctaaaaaagcc
ctgaccaggtcaatgatgagcctggctcagaaactcagcgggaagcgaacagcctacgac
cttcccttggagatggaagattccggactgtttgaagcagctcaccagctctttcccaca
ctgccccagtaccacccagtacaattactggagctcatggatctaggaaaagttcaccgt
gccaaagccatcctctcccacctggtcaaatgcatcgctggggaagtcgtggctcttaaa
gacaacaccgccaacccggagaaacgcgtacgctctcgaacgattagtgcaggcgggagc
accgccagggaaaggaagatgtttggcaaagatgagaattccacaccggattatacagag
atcagctccattcctcctcttcctctctatgcccttcttgcatctgacgaggacacgccc
tcaaagcctgaaaaagtgggcagtgtgagtggtgatagcgggcatggatccagtcacaca
gacgcttacgatgagttatttcacacacccagcattgcagacttggatcctctggaacaa
gatgagcaagaagaagctgggaacaaggtcattgacttgtcccagtacagccccacatac
tttggcccggagcatgcccaggttctgtccagcagtctcctgcactccagtttaccgggc
ctaactcgaatggagcagatgtctctcatggcactcgccgacaccatcgcgaccaccagc
acggatctgaaagacaaccaggaccggagcaaaggcggcgagacgctggatgactgcggc
cttaagtttttgcttgctgtcagactacacaccttcctctctacctctctgccgctggcc
caccgagcgcagctgctccggcaaggcctgtcgacgtgtcactacgcctgggctttccac
tcggaagctgaagaggaactgcttcacatgctgcctgccctccaccagggtgagcccacc
tggcccgagctgcgctcaatgggcgtgggctggtggcttaggagcaccaacaagcttcgg
agatgcattgagaaggttgctaaggccacttttcagcgaagtaatgatcctctggatgtt
gccatattttacctggccatgaagaagaaggcagtggtctgggggctgtacaggtcacag
aagaatgccaagatgactgaatttttccgcaacaacttcagtgaagaccgatggaggaaa
gcagcgctgaaaaatgccttttccctgttggggaagcagcggtttcatcattccgcagcc
ttcttccttttagctggctcccttaaggatgcagtagaggtgtgtttagagaaactgcag
gaccttcagctcgctcttgtgatatccagattatacgagtcagagtttgagacagcatcc
acctacaaaaagatcctccagagacatgtgctgggacatgataaacagataccgatgcac
ccggatccgttcttgcggagcatggcccattgggttctggaggagtacagcaaagctttg
gacaccctgctggagcagactgccagtaaaacaaagtcaggctccagcgatcacggttca
acgtccgcaagtaacgccggggttttcaacttctacaccttcctttgtacgcacccgctc
ctcctccgtcgccattttggctcctccaacaaggcgaaagtggccctgaccgccgagggt
cgcaaggttgactccattagtctggacgagagacgactcttttttactgccgcttatgat
catttgcaagcgggctgcccgatgctggcgctggaagtcctctccaagatgcccaaagtc
cgcaaaagttccaaagtcaaccgggagtcccccgagctcagcgccgggagtaagagcggg
ccgacgtctgagcgggactggtccgagcccgcgctgaatggctacgaatcgggcggcggc
agtttatcaaacagccgctcggattcagtgttgagttttgactggagccagccatcgctc
acacatccagatgagccgctggagctgaagtgggacagcgacagagatgacgaagaggag
caggaaagtaaaagtggcaaaagcagcagaacggtacacaacagcaatgtgttccacgac
agcatgttgtctacgatggaagcggcgatcagcgaggacagcgaggacgacgacgctgac
ttcatccacccttctgatgatgtcttggccacgcagctcaagtttacggcctgcttgaag
attttgaccaatgagctgaggacactttcaacagggtacgaactggacggaggaaaacta
cgttaccagctctaccagtggctggaaagagaggtggtgactctccagcactgttgcagt
tacaagccatgtcttgcggaggtgtctaccctagaagatgtacaaagtgccggcttggtt
gaagatgaacgggccccaagtccttgcagcgacagtcagaggagcaggagacactggctg
aagagcaatcagcccttactgaggatgttcctgagctactgcagcttgtacggatcccac
ggtggaggattggcctctgttcgcatggagctcattttactgcttcaagaatctcaccag
gacaacggcagcccatcagctatggcgacatgctgccagcacacctcgatcccgctcctg
atggcttgtacagcaaacatgaagaccgtggtggccaatcctattgtctacctgaccaac
ctgacgcacgacatcctccagaccatcaatgcgctcaactctcctccgcatccagatttt
gttcacaatgagatatatgtcatgcacactttggctgcttccttgtctgcctgcatttat
cagtgtctatgtgacggacactatagtcacatgaacaacttcacaggaatggtgtatcaa
agcgttttgctctctcagaagcagcaagcaagagccgccagcatagatggctccgttcag
cctaacacatctcctgcacagtggccaggcatcgcctcactgatccgtctgttgagctca
gcgggtgatgagagtcagccgggccttgccgtgttgctctgtgagatcctgacagctgtt
tacctcagcctctttgtgcacggcatggccactcactcaagcaatgagctctttcgcatc
atggcccaccccctcagcagcaacctctgggtgacggtgttcggaggcggcgcacgaact
cccgttgttgagaaagccaacagcccagcaaaaactcccccgccagcttcaccgggcaca
gacgtcgctgataaaaaaccccgacggttccgactgctctcgtcacgcagcggatcgaag
gaagactccagtatagacaaggaccctccgtccagtcccaagtccgaacctgtggtggac
caggaagccgcttccattttcaaagaatgttttgtcccgccggagctcagcatttgggat
tacttgatcgccaagccgtccctgccgccgtcagataaccgagttcaatacgactcagaa
gagagccagggcagtgaagatgaagaagaggaggaagatgaatacgacgatatatttgac
cccaactcccctaaaaaagagcacactaactacaattcatacagttggtgtttaatgcgc
ttggcaatggttcagctggtgctagtcaacctcaagtccttctaccccatagcaggatat
gatctattggacctgcctggagcctccccgctgtgtcacagtgtgctgaagacactgcag
cgctgggagcaggtgctgcagaaaagattggaaatttttggaggccctccctccaagtac
atctccacacacttccaggaggaagctatcacgccaggccccgcccttctcagacacaag
gcgctgtttgaaccatccaacactccgttcaggacgagccaccattcagccctccctgtc
aagcgcctttggcagttcctggtaaagcaagatgaagtgcaggagacattcatcaaaaac
atcttcaccaagaaacatgacgctggcgagttggttgaggaccagactgatatgaaatgt
tcagggatggacgagacaggaaaccatcagactgcgtcagatctgggctgccctgggggg
aaggctcgcatcattcacaaggagtcagacatcatcacggcttttgccatcaacaaggca
aatcgtaattgcttagtcatggcctctacacatgacattcaggagttggatgtctcatcc
attttggccacgcagatcttgacgtggatcgatgacgaagaggttgaaactaaaggagtg
ggcacagatgacttcctggtggtccacacgcacgatgactttatcagcctacacggcacc
acgccgtacactcgcagcagccccggcacgcccatcaacatgccgtggcttggaggccac
cagacaggccggggagcttccgtgatgatcaagagaaatatcaacaatgtgagaagaatg
acctcacatcccacgctgccgtactacttgacaggggcgcaagacgggagcgtgaggatg
tttgagtggggtcactcccagcagatcatctgcttcagaagtccaggcaactccagagtg
accaggattcgattcaaccatcaaggaaataagtttggaatcgtggatgccgatggcggt
ttgagtctctggcagaccaacacaagcggagccgctcccaaaccttatctgactctacag
tgccacaacaagacggctcatgattttgtctttgtgggctcctcctccctcatcgccact
gcgggtctgtctacagacaaccggaatgtgtgtctgtgggacacattggtgactcccatg
aatagccttgtccatgccttctgctgccatgagtccggcgccaccgtgctgctaatggcg
cccaggcagcagttgctgatcacgggcgggagaaagggctggatcagcgttctggagctt
cctcaccggcaccagcggcagagcttccaggcacacgactcgcccgtcaaagccctcgcc
gtcgacccgaccgaggactgcttcatcagcgggtctgccgaaggcagcttgaagatgtgg
aacctggccacgcagtgtctgctctactgcttccccaacgaacacgctcggcagtcgctc
ttccgtaacttgggcacgggcgtcatgcaggtggagtttgggccagccaatcacatcttt
tcctgcggcgctgacggcaccatgaaaatgaggatcatgccgaaccgcttcagcgtcaac
aacaacaacacccagcagcatcagcacggcaacctcaaaagtgatgtcaagttcattttg
tag
DBGET
integrated database retrieval system
