Syngnathus scovelli (Gulf pipefish): 125993951
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Entry
125993951 CDS
T08785
Symbol
clip1a
Name
(RefSeq) CAP-Gly domain-containing linker protein 1 isoform X1
KO
K10421
CAP-Gly domain-containing linker protein 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
125993951 (clip1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sscv03036
]
125993951 (clip1a)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
sscv04812
]
125993951 (clip1a)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
125993951 (clip1a)
Cytoskeleton proteins [BR:
sscv04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
125993951 (clip1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAP_GLY
CLIP1_ZNF
Spectrin_Anc-1
CCDC39
Motif
Other DBs
NCBI-GeneID:
125993951
NCBI-ProteinID:
XP_049618961
LinkDB
All DBs
Position
3:20764871..20782858
Genome browser
AA seq
2097 aa
AA seq
DB search
MSSAKASGIKVPSKVARVPGTGAPKTNPASGSKTAVVEKSASGVDDNNDDGDSFQIGERV
WVNGTKPGYVQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEALRGIFTRPSKL
SRTEGEGDGTQTAPPSRAASPARSVASVASHAPAVKSAAAKKTSSAIPTAQSSNLARTNS
ESVSNLSESGSVKKGERELKMGDRVLVGGTKAGVVRFIGDTDFAKGEWCGVELDEPLGKN
DGAVAGTRYFQCQPRYGLFAPVHKVTRIGFPSTTPAKATARKAAVTPGSLKRSPSASSIS
TMSSVTSSVSTKASRTGLLTETSSRYNRKISGTTALQEALKEKQQHIEQLMVERDMEKAE
VAKATSHAGEMEQEISLLRDDQEQMEAKMDQLRALVEAADKDKVELLNQLEEERRKVEDL
QFRVEEACITKGDLETQTRLEHVHSKELEQSLHFEKTKAEKLQRELEDTRVATVSERSRI
MELERDLSLRTREVADLQLRLGSRQASDDPDGGGVSPLLEEITSLRDRLASLEAERREEL
ASLQEKLESHEKAHGEATAQLQAAGVKLSGDNEQLRMRLSQAEKDNADVLEKLKLEHERA
LEEAAAARNMQIHELKERLASLAEDKERLDDAVRAGVDKAENQHLVELEDVLGKLHAAEL
KVKELEEMGAQLARQAQDERETKETVAQMVRCLCLSQSNQKAPLEDLPNRGNPQATELVG
ELRSLLEGKENEILSLQQSLASEKEAVQQQLGGLKQQLAISTEEQTKSAKTMQETLERFS
KKEEQCTTLTTESESLRSQLSGLERKLAAADEKVRQLGEDKSKLEKDISDMMTASGDSSL
QLSKMNEDLRQKERRLEELQSQLVEQKNKVALSNEQREQDLSRKDQELCETRDNHAAQMK
CLQEKIAALEMSVQQSASQAEELKDSQAKALTQASEVHGKEVQGLRDKLDNLKKELSSSK
DRSQKLEKTVSELKTYKDKLQHLSAELDSSKHNVEHLSAKLEEQTVALERKCQDSEEARA
DTCKLETQLSETQSKLSALRDLSVQNEDLRVTVEKLSKERDELLDGNKSSEVERTSLKDQ
LEKLKKGLLEAQDENANLKSTNIKQQSDLEDLRKQNEEKNATLLKQKQDARRAESQNKQL
LEDYENICKERSRLEEDLNESRSKLACENDKLISELDAAKTGKKCLDAKNAELQAKLQSL
NLEKEDLTMTNNQLQSLVETLSKEKATMSSEISAVASDKKNLEALKEELQNKLNLAKKEL
DSSVHECEDLKASRLSLVQMLEESKTSSQVTDSERLHLLQEKEDLLASQRKVCKEKEELL
KDIEELKETIKESAQQLTLSNLKLTEMSATLEQERESFGTQNSESSEALHALRKEKLTLH
AALEQQKTNYERLAGEKGEIEAKHSKAAADIKDLLQEREKLVSDIRATKDQLDSSSRTQG
DINQEKSRLEGMLEEVTCKTNSVEAQLTSLEKEKAQLESELGKRSSQIELLEKANADLVR
GCGELKMHLEQSTLELKGQVDKLSKHTDESDAEKKKLLEEILELKKQTESLSEAKQHLEE
RLETESSERTRAAWQTEELQNTLSRVRRDNDDMSAQLQNADEQQKSITAETDLAKAKLKE
QELVTRRLSEDKRELLSKLAETDKRVAALETEKEALLAGRSRSEHNVSQWLVEKSLLIGQ
LEDLQEDVKTLRVDAAATEKRHQEAVAEGERLQSQLKQAIAQQLEASEASGQTAEALEQL
TKERDALLQDKCEAQVQLESLHSSKREMETQMDELKQEQSKYQQELSTSKEQLYAKSQKL
ESLSREIEELKEAVSVKSRSLQSIQNEKDKLAQDVENNHQDHSEFSKLRDEHSKLQAQLK
ELKQSLPSYAFSESTLKKKLEKENAEFQRSVRKNGVLASEKDQQMEALKSELAATRVQSA
SAQTLQTAIAALEQDKAQLKERVKELEQELAAPSGDVVVSQLRDTDTQAENHQAAIDFLN
SVIVDLRKNNLDLKDQLEKLAAAALNGNNASELDDDDREDKESSKKKKKKKPPPRLFCDI
CDCFDRHDTEDCPAQAQTPDTPPHTAYHGSKGAERPYCDICELFGHWSHDCNDDRTF
NT seq
6294 nt
NT seq
+upstream
nt +downstream
nt
atgagctcggccaaggccagcggtatcaaagtgcccagtaaggtagctcgggtaccaggt
accggcgcaccaaagaccaacccggcctcaggaagtaaaaccgccgtggtcgaaaaatca
gcctccggcgtggacgacaacaacgatgacggcgatagcttccagataggcgagcgcgtc
tgggtgaatggaaccaaaccgggctatgtgcagtttttgggagagacccagttcgccccg
ggacaatgggcgggcatcgtgctggacgaaccaatcgggaagaatgacggctcggtggcg
ggcgtgcgctacttccagtgcgaggccctgcgagggatcttcacaagaccgtccaagctg
tcgcgcaccgagggagagggcgacggcacccagacggcaccaccctcccgtgccgcctcg
cccgcccggtccgtagccagcgtggcctcccacgcgcccgctgtcaagtccgcagcagcc
aagaagacctcgtccgcaatcccaacggcgcagtcgtccaacctggctcgcaccaacagt
gaatcagtctccaacctgtcagagagtggctcggtcaagaaaggggaacgggagctcaag
atgggtgaccgggtgttggtcggcggtaccaaggcaggagtggtgcgctttatcggcgac
acggattttgcgaaaggcgagtggtgtggtgtggagctggacgagcccttggggaagaat
gacggtgcagtggcgggcacaaggtacttccagtgccagcccaggtacggcctattcgca
ccggtgcacaaagtcacgcgcatcgggttcccctccaccacgccggccaaggctacggct
cgcaaggcggccgtgacgccaggcagcctgaagcgcagccccagcgcctcctccatcagc
accatgagctccgtgacctcctcggtcagcaccaaggccagccgcactggcctgctgaca
gaaacgtcgtcacggtacaaccgcaagatctcgggcaccacggccctgcaggaggctcta
aaggagaagcagcaacacattgagcagctcatggtggagcgggacatggagaaggccgag
gtggccaaagccaccagccacgccggtgagatggagcaggaaatctcgctgctcagggat
gaccaagagcagatggaggcgaagatggatcagttacgtgccttggtggaggcggccgac
aaagacaaagtcgagctgctcaatcaactcgaggaggagcggagaaaagtggaagacctt
cagttccgcgttgaggaggcgtgcattacgaaaggtgacctggagacgcagaccaggctg
gagcatgtccacagtaaggagcttgaacagagtctacactttgaaaagaccaaagctgag
aagcttcaaagagagttagaagacactagggttgccaccgtgtcggagagatcccgcatc
atggagctggagcgggacctctcgcttcgcacccgggaggtcgctgacctgcagctccgt
ctgggctcccggcaggcctccgacgaccctgacggcggcggcgtctctcccctattggag
gagatcacgtccctgagagaccgtctggcctcactggaagccgaacggcgggaggagctg
gccagcttacaggagaaactggagtctcacgagaaggcgcacggcgaggcgaccgcccag
ctccaggccgccggcgtcaagctgtccggcgacaacgagcagcttcgcatgcgcctgagc
caggccgagaaggacaatgccgacgtgctggagaagctgaagctggaacacgagcgagcc
ctggaggaagccgccgccgcccgcaacatgcagattcacgagctgaaagagcgtctggcc
tccctcgccgaagacaaggagcgcctagatgacgccgtgcgcgccggcgttgacaaagct
gagaatcagcacctggtggagctggaggacgtcctcggaaagctccacgcggccgagctc
aaggtgaaggagctggaggagatgggagcgcagctagcgcgccaggcccaggatgagaga
gaaaccaaagagacggtggcacaaatggtccgatgtttgtgtcttagccaaagcaaccag
aaagcaccactggaagatcttcccaatcgaggaaacccacaggcaactgagttagttggt
gaactgagatcactgctggaaggcaaagagaatgaaatcctgtcactacagcaaagctta
gccagtgaaaaagaagctgtgcagcagcagcttggaggcctgaagcaacagttggctata
agcacagaggagcagactaaatctgcaaaaactatgcaagaaacccttgagaggttcagc
aaaaaggaagagcagtgcacgactcttaccacagaatcagagtctctcaggagtcagctt
agtgggctggagaggaagctggcggctgcggacgagaaggtgcggcagctgggcgaggac
aagagcaaactggagaaagacatttcggacatgatgacggcatccggcgacagttcgttg
cagctgagcaaaatgaatgaagaccttcggcagaaagaaaggaggctcgaggagttgcag
agtcagttggtggaacagaagaacaaggtggccctctccaatgagcaacgggagcaggat
ctgtcgcgcaaagaccaggaactgtgtgagacgcgagacaaccatgcagctcaaatgaaa
tgtctccaggagaagattgcggcattggagatgagtgtgcagcagagtgcaagccaggcc
gaggagcttaaggactctcaggcaaaggctctcacccaggcctccgaggtccacggcaag
gaggtccaagggctgcgagacaaactggacaatctgaagaaggagctctcctcctccaag
gacaggagccagaagctggaaaagacggtgtctgagctgaagacgtacaaggataagctt
cagcatctttccgctgagctcgactcctccaagcataatgttgaacacttgtccgcaaaa
ctggaagagcagactgtagctctggagcgcaagtgtcaggatagcgaggaagctcgcgct
gacacgtgcaaattggaaacgcagctctcagagacgcagagcaagctttctgctctccgg
gatctttccgtacagaacgaggacctccgggttaccgtagagaagctctcaaaggagagg
gatgaattactcgacggcaacaagagctcagaggtagaaagaacgtcactcaaggaccag
ttggagaaactcaaaaaaggtctcctggaggcgcaggatgaaaacgccaacctgaagagc
acaaatatcaaacagcagtccgatcttgaggatctccggaaacaaaacgaggaaaagaat
gccacgctgctcaaacagaagcaggatgcgcggcgggctgaaagtcaaaacaagcagctc
ctggaggactatgaaaacatctgcaaagagcgcagcaggctagaggaggacctcaacgag
agcaggtctaaactcgcgtgcgagaacgacaagctcatctcggagttggatgcggctaaa
accggcaagaagtgtctggacgccaagaacgcagagttgcaggccaagctgcagtctctc
aacttggagaaagaagatctgacaatgacaaacaatcagctgcagtctctcgtagaaacg
ctaagcaaagagaaggccaccatgtcctccgaaatcagcgcggtcgcgtcggacaaaaag
aacctcgaggcgttgaaggaggaactgcagaataagctcaacctcgccaagaaggagctg
gacagctccgtccacgaatgcgaagacctgaaggcgtctcgcctcagcctggtccagatg
ctggaggagtccaagaccagcagccaagtgacggattccgaaaggcttcatctcctacag
gagaaggaggacttgctcgcctcacagaggaaagtctgtaaggagaaggaggagctgctt
aaagatattgaagagctgaaagagacgatcaaagagtctgcccagcaactgactctgtcc
aacctaaagctgaccgagatgtctgcaactttggagcaagagagagagtcgtttggcacg
cagaattccgaaagctcagaggctctgcatgctctgaggaaggagaaactgaccctccac
gcggcgctcgagcagcagaagacaaattacgagcgtctagctggtgagaagggcgaaata
gaagcaaagcactccaaggccgccgctgacattaaggacctcttgcaagagcgggagaag
cttgtgagtgacatccgagccacaaaggatcaattggacagctcttccagaactcagggc
gatatcaatcaggagaagtctcgcttagaagggatgctggaggaagtcacgtgcaaaaca
aattcagtcgaagcccagttgacgtctttggaaaaagaaaaggcccagctcgagagcgaa
ctggggaaacgttcctcccaaatcgaactcctggaaaaggccaatgccgatctggttcga
ggatgcggggagctcaaaatgcatctggagcaatccaccttggaattgaaagggcaagtc
gacaaactctccaaacacacggacgagtcggatgctgaaaagaagaagctcctcgaagag
atcctggagctaaaaaaacagacggagtcgttgtccgaggccaagcagcatctggaggaa
cggctcgagacggaatccagtgaacggactcgagccgcttggcaaacggaggagttgcag
aacaccctgtcccgagttcggcgggacaacgacgacatgtccgcccaacttcagaacgca
gacgagcagcagaagtctataacggcagaaaccgacctggccaaagcaaaactcaaggaa
caagagctagtgacccgtcgcttgtctgaagacaagcgagagcttttatccaaattggcc
gagaccgacaaacgggtggcggcactggaaacggagaaggaggcgctcctcgctggacgc
agtcgctctgagcacaacgtttcccagtggcttgtggaaaagtcactgctaattggccag
cttgaggacttgcaggaggatgtgaagaccctccgagtggacgcggccgccacggagaaa
cgccaccaagaggctgtggccgaaggagagcggctccagtctcaacttaaacaggccatt
gctcagcagcttgaggcttccgaggcttccggccagaccgccgaggcccttgagcagctg
accaaggagagagacgctttgctccaagataagtgtgaagctcaagttcagctggagagt
cttcattcttccaagcgagaaatggaaacgcagatggatgagctcaaacaagagcaatca
aagtaccagcaagagctgagcacctccaaagagcaactttatgccaaaagccaaaagctg
gagagtctctcccgggaaatcgaggagctcaaagaagcggtgtccgttaagtcacgctcc
ctgcagtcgatccaaaatgagaaggacaagctggctcaggatgtcgagaacaatcaccag
gaccacagtgaatttagcaagctcagggacgagcactcaaaactccaagcacagttgaag
gagttgaagcaaagcctgccaagttatgccttcagcgagagcactttgaagaagaagctg
gagaaggagaatgccgagttccaaaggtccgttcgtaagaacggtgtcttagcctccgag
aaggatcagcagatggaggccctaaagagcgagctggctgccacgcgtgtacaaagtgcc
tcagcccaaaccttgcagaccgccatcgctgccttggagcaggacaaggctcagctcaag
gaacgagtgaaagagctggagcaagagcttgccgccccatcaggtgatgtcgttgtcagc
cagctgagggacacggacacgcaggccgagaaccatcaggcagcgattgacttcctgaat
tcggtcatcgttgacctgcggaagaacaatttggacctcaaggaccagttggagaaactg
gccgctgccgctctcaacggcaacaacgccagcgagttggacgacgacgacagggaggac
aaggagagcagcaagaagaagaaaaagaagaagccccctcctcgactattctgcgacatc
tgcgactgcttcgaccgccatgacacggaggactgcccggcgcaggcgcaaacgcccgac
acgccgccgcacaccgcctaccatggcagcaagggcgccgagcggccctactgcgacatt
tgcgagctcttcggccactggagccacgactgcaatgacgaccgaaccttctaa
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integrated database retrieval system
