Syngnathus scovelli (Gulf pipefish): 125993959
Help
Entry
125993959 CDS
T08785
Name
(RefSeq) A disintegrin and metalloproteinase with thrombospondin motifs 12 isoform X1
KO
K08626
a disintegrin and metalloproteinase with thrombospondin motifs 12 [EC:3.4.24.-]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sscv01002
]
125993959
Peptidases and inhibitors [BR:
sscv01002
]
Metallo peptidases
Family M12: astacin/adamalysin family
125993959
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP1_ADAMTS
TSP_1
Reprolysin
ADAMTS_spacer1
ADAMTS_CR_2
Pep_M12B_propep
Reprolysin_5
ADAMTS_CR_3
Reprolysin_3
TSP1_spondin
Reprolysin_2
Reprolysin_4
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
125993959
NCBI-ProteinID:
XP_049618973
LinkDB
All DBs
Position
3:22312815..22328263
Genome browser
AA seq
1516 aa
AA seq
DB search
MPWLQECTLLLRLLLLLQHFVFFLEGGHQDLNFSLLAGQGAVPQAGSVIHPVRTNADGEF
LSHSLSHHFKDGRVRRDLSATAGPVYYKLNYTGRALMLNLTQNHQLLSSDYVLETRNGIA
DRTESRRTPAGSSCHLLGTVEVSGVKGTAAVSTCNGLRGFFSLPEGHFFIEPLPKSPWDP
AGSPEPHIIFPRVATVTHREKRSAEGRRAPSPCGVADGDSVRVEREREQWEREHGPTQSR
SRRSVSRERWVETMVVADSKLMDYHGSDNVESYIFTIMNMVAGIFHDASIGNAIHVLLVR
LILLQGEEKGLKIAHHADTTLSSFCAWQKNLNPQSDTHPAHHDVAVLVTRKDICAGMNQP
CETLGLSHLSGMCQPHRSCNINEDSGLPVAFTIAHEMGHSFGIHHDGQGNDCEVGGRHPF
IMSRQLMYDSSPLTWSSCSKDYITRFLDRGWGFCLDDRPSKRDLTTPLARLGVRYTTHHQ
CQLQYGPNATYCHEVDNVCQILWCSVNGSCRSKLDSPIDGTRCGPEKWCISGECVIVGKL
PETVNGGWGQWATWSHCSRTCGTGVQSAERECSNPKPEFGGKYCTGERKRYRTCNTRACQ
KDKPTFREMLCSEFDTVPYQNELYKWIPVANPLNPCELHCRPDSEYFSEKMLDTVTDGTP
CFMNNNSRNICVNGVCKEVGCDYGIDSNAVEDRCGVCLGDGTSCKTVYKSFEEGEGFGYV
DVGVIPEGARDILVKETEEAGNFLALRRQGSEDYFLNGNYIIQWNGEYQAGGTTFYYQRK
GNMENLTAPGPTKEPVVLQLLFQEKNPGLQYEYTIRKSKETGNEVIEPIYRWRHGAWTDC
STTCGQGEQQQPARCFETDVGVVDESLCDPEVRPQDRQRKCKNMDCPARWWVGGWQQCSA
ACGSEGLRKRTVLCVRTVSGEERVLHPAECKQLLKPKPLVPCNRDIPCGQDWLVGLWEEC
PVTCGGGVRSRNVTCALAPQNICDLATKPRTRSLCALQSCPSSSLRRQPGSPPKYRRVYP
PPKRTPPKPSSTTTGAPTSTSATPTTRTTSLTSKIPFLDVEKTNKRGESPRVAKIEPEEI
LDSEDGSTPDAVTSVPGYDYIVQERTSVEQEDEEGIIDLDVGTNWLPNPLQSTTAMPHVV
SAAALQTSSPGPQPTTEAATSSSFSPHTTAEISRHGTPFAVGLTTPTLKSRWVPPKSGLR
TTQAPLSTTIKVIKTKKPAVTPEKNATAKTSSTRSRGNRSRNQNQPPPQRTQGPRELGVF
WLAGNWSECSTTCGIGAIWRKVTCSSQKDEDCAGTKKPEPARTCRLQPCAIWQSGSWSKC
PEKCAVVGKRYRDVQCVDSQNHRPLRPFHCQALSGKPVSTLTCPLKTCADWNVSPWGPCS
ASCGEGMRERLVYCPVPQGCGPTPRPNSTESCGLKPCAEWRAEEWEQCSVSCGGGQQRRD
VTCVNAQDSAIMPDGLCEKMSKPEALRKCNTQQCRPTTGPVCRKNTMSSRFCDKLKLLGR
CSLRSVQRQCCSTCGS
NT seq
4551 nt
NT seq
+upstream
nt +downstream
nt
atgccatggttgcaggagtgcacgcttctgcttcggcttctgcttctgctgcaacacttt
gttttcttcctggaaggcggccaccaagacttgaacttctctctccttgcaggacaaggt
gctgtgcctcaggcagggtccgtcatccatcctgtgagaaccaacgctgacggagagttc
ctctcccactctctgtcccaccacttcaaggatgggcgagtcaggcgagacctcagcgcg
acggcggggcccgtttactacaagctcaactacactggacgagctttgatgctcaatttg
acgcaaaaccatcagctcctttcgagcgactacgtcttggagacgcgtaacggcatcgcc
gacaggacggaaagtcggcggactcccgccgggtcgtcctgccatcttctcggcaccgtc
gaggtctcgggcgtgaaggggacggcggccgtcagcacgtgtaatgggctgagaggcttc
ttctccctacccgagggccacttcttcattgagccgctccctaaatctccatgggatcct
gcaggttccccagagccgcacatcatcttccccagggttgccacggtaacgcacagggaa
aaacgcagcgccgagggtagacgggcacccagcccgtgcggagtagcagatggtgactct
gtgcgtgtggagagggagagagagcagtgggagagggagcacggcccgacgcagtcccgc
tcccggcgctcggtcagcagggagcgctgggtggagaccatggtggtggccgattccaag
ctcatggattatcacggcagcgacaatgtggagtcctacatcttcaccatcatgaacatg
gtggcgggtatcttccacgacgccagtatcggcaacgccatccatgtcctcttggttcgt
ctgattctgctacaaggagaagagaaaggtctaaagatcgcccaccatgcagacaccact
ctgtccagcttctgcgcctggcagaagaacttaaatccacagagcgacacgcatccagcc
catcacgacgtcgccgtgttggtcaccaggaaggacatctgcgctggaatgaaccaaccc
tgcgagaccttgggcttgtctcacctctctgggatgtgccagccgcaccgcagctgcaac
atcaacgaggattccggcttacccgtggccttcaccattgcccacgaaatgggtcatagc
tttggaatccatcacgacggccaagggaacgactgcgaggtgggagggaggcaccccttc
atcatgtccagacagctgatgtacgacagctcgcctctcacttggtcatcctgctccaag
gactacatcacacgcttcctcgatcgcggatggggtttctgcctggacgaccgtccttcc
aaaagagacctcaccacccctctggcacgccttggcgttcgctacacaacgcaccaccaa
tgtcagctccagtacgggcccaacgctacctactgccacgaggtggataacgtttgccag
attctttggtgctccgtgaacggctcctgtcgctccaaactggactcgcccattgacggg
actcgatgcgggccggaaaagtggtgtatctccggagagtgcgtgattgtgggcaagctg
cccgagacggtgaacggaggctgggggcaatgggcgacgtggtctcactgctccaggact
tgcggcactggagttcaatcagccgaaagagaatgtagcaacccaaagccagagtttggc
ggcaagtactgcactggtgagaggaagcgctatcggacgtgtaacacgagagcctgccag
aaggataagcccacctttagagagatgctgtgcagcgagtttgacaccgtgccctaccaa
aacgagctctacaaatggattcctgtggctaaccccttaaacccttgcgagctccactgc
cggcccgacagcgagtatttttcggagaagatgctcgacacggtgacggacggaacgccg
tgcttcatgaacaacaactccagaaacatctgcgtcaacggagtgtgcaaggaggtgggc
tgcgactacggcatcgactcaaatgcggtcgaggatcgttgcggagtgtgtttgggtgac
ggcacaagctgcaagacggtctacaagtcgtttgaggaaggagagggcttcgggtacgtg
gacgtgggggtgatacctgagggggcccgggacatcctggtgaaggaaactgaggaggca
ggtaatttcctggcgctgaggagacaaggctcggaggactactttctcaacggcaactac
atcatccagtggaacggggagtaccaggccggtgggaccaccttctactaccaacgtaag
gggaacatggagaacctcaccgcgcctggacccaccaaagagccagtcgtgttgcagttg
ttgtttcaggagaagaaccctggcctccagtacgagtacactattaggaagagcaaagag
acaggaaatgaggtcatcgaacccatttacaggtggagacatggcgcatggacagactgc
agcaccacttgtggacaaggtgaacagcagcagcccgcgcgctgcttcgagacggacgtc
ggcgtcgtagacgagtctctgtgcgacccagaggtccgtccgcaagacagacaacgcaag
tgtaagaacatggattgccccgccaggtggtgggtgggaggctggcagcagtgctcggcc
gcctgcggatcggaaggtttgcggaagcgtactgtgctctgcgtccgcaccgtttccggt
gaggagagggtgctccatcccgcggagtgcaagcagctgcttaaacctaaacccctcgtg
ccgtgcaatcgagacataccctgcggacaggactggctcgttggactctgggaagaatgt
ccggtgacatgcggaggaggcgtccgttcccgcaatgtgacatgtgccttagcgccccaa
aacatctgcgacctcgcgaccaagcctcgcaccagatcgctgtgcgctctacagagctgc
cccagttcgagtcttcggcgacaacccggatctcctccaaaataccgccgcgtttaccca
ccaccaaagagaaccccccccaagccttcctccaccaccaccggcgctcccacgagcacc
tccgccacacctacgactaggaccacatcactcacctctaaaatccccttccttgatgtg
gagaagactaacaaaagaggggaaagtccaagagtagcaaagatagaaccagaggagatc
ttggacagcgaggatggaagcacacccgatgcggtgacgagcgttccgggttatgactac
atcgtacaagagaggacatcggtggagcaggaggacgaggaggggatcattgacctggac
gtcggtaccaattggctcccaaatcctcttcaatcaaccacggcgatgccgcatgtcgtt
tctgcagccgctttacaaacaagtagtcctggcccgcagccaaccacagaagccgccaca
tcttcctccttcagcccacacactactgccgagatcagtcgccacggcaccccatttgcc
gttggtctaactacacccacgttaaagtcacgttgggttccgcccaaaagcggcctccgc
acaacgcaagcgccgctcagcaccacgataaaggtgattaaaacaaagaagcctgctgtc
acccccgagaagaacgccactgccaaaacaagctcaacccggtccagaggtaaccgctcc
aggaaccagaatcaaccacctccccagcgcactcagggtccaagagagctgggtgtgttt
tggctcgcaggaaactggagcgagtgctcaaccacatgtggaattggcgcaatatggcga
aaggtgacgtgcagttcccagaaggacgaggactgcgccggcaccaagaaacccgagccc
gctcgcacttgccgtcttcagccgtgtgccatctggcaaagcggtagctggagcaagtgt
ccggagaaatgcgcggtggtaggaaagcgctaccgggatgtccagtgtgtggattcccag
aatcaccgtcctctcaggccgttccactgtcaggcgctgtccggcaaacctgtcagtact
ttgacttgccccctcaagacctgcgcggactggaacgtgtcaccgtggggaccctgctcc
gcgagctgcggcgagggaatgcgagagcgcttggtgtactgtccggttcctcaaggttgt
gggccgacacccaggccaaacagcaccgagtcgtgcggcttgaaaccttgcgctgagtgg
agagcagaagagtgggagcagtgctcggtgagctgcggaggaggtcagcagcggcgtgac
gtcacctgcgtgaatgcccaggactctgctatcatgccagacggcctgtgcgagaagatg
tccaaaccggaagcgctcaggaaatgcaacacgcagcaatgtcggcccaccacaggccca
gtgtgcaggaagaacacaatgtcgtctcgcttttgcgacaaactgaagctgttgggccga
tgctctctcaggtcggtgcagagacagtgttgtagcacctgcggctcatag
DBGET
integrated database retrieval system
