Syngnathus scovelli (Gulf pipefish): 125994083
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Entry
125994083 CDS
T08785
Symbol
krt1-c5
Name
(RefSeq) keratin, type 1, gene c5 isoform X1
KO
K07604
type I keratin, acidic
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
sscv04812
]
125994083 (krt1-c5)
04147 Exosome [BR:
sscv04147
]
125994083 (krt1-c5)
Cytoskeleton proteins [BR:
sscv04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Types I and II: Acidic and basic keratins
125994083 (krt1-c5)
Exosome [BR:
sscv04147
]
Exosomal proteins
Exosomal proteins of epithelial cells
125994083 (krt1-c5)
Exosomal proteins of other body fluids (saliva and urine)
125994083 (krt1-c5)
Exosomal proteins of colorectal cancer cells
125994083 (krt1-c5)
Exosomal proteins of melanoma cells
125994083 (krt1-c5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
ATG16
Crescentin
NAPRTase_C
Motif
Other DBs
NCBI-GeneID:
125994083
NCBI-ProteinID:
XP_049619243
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All DBs
Position
3:20958577..20961842
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AA seq
453 aa
AA seq
DB search
MLAKFDFKASVRGLCCMLARLCRIRRRMASTLSMRSYSVRQPSFSSASVRDGARSGARSK
PAMSMAGALSRSMSVGNGLHLLGAGLSLNGLGAGASEKETMRGLNDRLANYLDKVRSLER
SNAELEIKIKQLMVERQPKGHDVDNMMAQAHAIGQEVRKRTLENARLMLEIDNAKLAADD
FRVKWEAEVALCQSVERDCQALRRAKSDHDQIISMLRGDLDSLKEELYFLKKNHDEEKSS
LKVRMANEQVNVEVDAAQGPDLGAIMAELRVQYEGIARKSKEEAEAWYLKKMDAVQSEVK
ESNEALRCAQSELGERRRFLQALEVELDSLRKQAGMLEGNLMETGHKYSVEMDRLQVALV
QLEDELSQLRLDMQRHKTDYEQLLRIKQNLEMEIATYRKLLEGEEMVKEKPPIPKKDPDV
RTRKIVKVVTQTMVNGKVVDESSEVEQIEEHKK
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgttggcaaaatttgatttcaaagcaagtgttaggggtttatgttgtatgctggcccgt
ttgtgtagaattcgcaggaggatggcgtcaacgctgtctatgcgcagctactcggtgcgc
cagccttcattctctagcgcgtcggtgagggatggcgccaggagcggcgcccgctccaaa
ccggccatgtccatggccggcgccctgtcgcgctccatgtcggtgggcaacgggctccac
ctgctgggcgccggcctgtccctgaacgggctgggagcgggtgccagtgagaaggagacc
atgcgggggctgaacgaccgtctggccaactacctggacaaggtgcgctccctggagagg
tccaacgccgagctggagataaaaatcaaacaactgatggtggagaggcagcccaaagga
cacgacgtggacaacatgatggctcaggcgcacgccatcgggcaagaggtgcggaagagg
acgctggagaacgcccgcctcatgctggagatcgacaacgccaagctggcggccgatgac
ttcagggtcaagtgggaggcggaggtggccttgtgtcagtcggtcgagcgcgactgccag
gccctgaggcgagccaagtccgatcacgaccagattatctccatgctgagaggggacctg
gacagcctcaaagaggagctctacttcctcaagaagaaccacgacgaggagaagagctcc
ctcaaggtccgcatggccaatgagcaggtgaacgtggaagtggacgccgctcagggcccc
gatttgggtgccatcatggccgagctgagggtccagtatgagggcatcgcacgcaagagc
aaggaggaggccgaggcctggtacctcaagaagatggacgctgtgcagtcggaggtgaag
gagagcaacgaggcgctccgatgtgcccaaagcgagctgggcgagaggcgacgtttcctg
caagcactcgaggtagaactggacagtcttcgcaagcaggcaggcatgctggagggcaac
ttgatggagacgggccacaagtactcggtggagatggaccgcctgcaggtggcgctggtg
cagctggaggatgagctgtctcagctgcgcctggatatgcagcgccacaagaccgactat
gagcagcttctgcgcatcaagcagaacctggagatggagatcgccacctacaggaagctg
ctggaaggagaggagatggtgaaagaaaaacctccaattcctaaaaaagaccctgacgtg
cgcaccaggaagattgtcaaggtggtcactcagacgatggtcaacggcaaagtggtggac
gagtccagcgaggtggagcagattgaggagcataaaaaatga
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