Syngnathus scovelli (Gulf pipefish): 125994249
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Entry
125994249 CDS
T08785
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03030
DNA replication
sscv03410
Base excision repair
sscv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125994249 (pole)
03410 Base excision repair
125994249 (pole)
03420 Nucleotide excision repair
125994249 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sscv03032
]
125994249 (pole)
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125994249 (pole)
Enzymes [BR:
sscv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
125994249 (pole)
DNA replication proteins [BR:
sscv03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
125994249 (pole)
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
125994249 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
CpXC
APP_N
Motif
Other DBs
NCBI-GeneID:
125994249
NCBI-ProteinID:
XP_049619419
LinkDB
All DBs
Position
3:16847807..16860155
Genome browser
AA seq
2291 aa
AA seq
DB search
MVFQNSGRFKSDQGKSGDQENQDDGSSMSALKRLERSQFTDEMDSRFGFDRMKEPGEKTG
WLINMHPAEILDEDKRLISVVNYYFIQEDGSRFKVALPFKPYFYIATKKSCEREVILYLS
RKFQGRVSKLEIISKEDLDLPNHLVGLKRGYIKLSFNTVDDLIKVKREISPAVRKNRERE
QSNDVYTSMLSSALSGGNVTSAEEDGMSKNISDQLDNIVDMREYDVPYHVRVSIDLKIHV
AHWYNVRYRGSTYPPEIVRRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYMI
DGQGFLITNREIVSENIEDFEFTPKPEYEGPFTVFNENDEMALIQRFFDHVQETKPNIFV
TYNGDFFDWPFVETRASVHGLNMHREIGFQKDSQGEYKSTQAIHMDSFRWVKRDSYLPVG
SHNLKAAAKAKLGYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYLYMKYVHPFIFA
LCTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIVFPNKQEQVFNKLTDDGHVLDSETYV
GGHVEALESGVFRSDIPCRFKMNPAAFDFLCQRVEQTIRHAIEEEEKIPLEQVTNFNEVC
EDIKKKLTSLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDAATCAACDFNKPG
ATCQRRMAWHWRGEIMPASRSEFHRIQQQLESEKFPPFFPNGPPRAFHTLNREEQAKHEK
KRLADYCKKAYKKIHVTKLEERVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKLS
AAQDSGDAAEAKRCKNMEILYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCYTGA
NIITRARELIEQIGRPLELDTDGIWCVLPNTFPENFVVKTSNEKKPKVTISYPGAMLNIL
VKEGFTNEQYHELVDPASLTYNIRAENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFN
EDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYASVAKVADYWLDVLYSK
AANMPDAELFDLISENRSMSKKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYVI
SRKPEGAPVTERAIPLAIFQAESSVTKHFLRKWLKMPSLHDFDIRSILDWSYYIERLGSA
IQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISELFTSEGKRQVAPMRH
DGHQVPDMEDFGTPAKPLQPAILISTKRKRTSQGEDSQVESQDLELTQSWREVLGPPPPM
GKTKEERLVWLRYHKKKWELQMKQRKERKKKRRLLDGEAQPVGGGLIRDGHTTGLGSFLR
KTARSILDMPWQVVQIAETSHPGLYKLWAVIGNDLHCMKLNIPRIFYVNQKVPKQEEGPT
YKKVNRLLPRSNIVYYLYEYCVPEDMYQEHINEINADLSAPDIEGVYETQVPLLFRALVQ
LGCVCMVSKRVGRDLAGREADTFDLENLDMKSLAQFSYLEPGSVRHMYLYHHSQGHKALF
GLFIPSQRKANIFILDTVRSNQMPNLSNVYTAERTALLEKTTEDLLPPEKHNFEVRAEND
VKAIHRALQRILLSYKEERRGPTLIAVQSNWELRRLTTGMPVLDEFPVVPVHVIDEISYN
VLDWQRHGARRMIRHYLNLDSYLSQAFDMARYYHLPVGNLPQDVSIFGSDLFLARHLRKH
NHLLWLSPTARPDLGGKEADDSRLVMESDDRCSVEINAQGCYSTVCVELDLQSLAVNTIL
QSQHVNDMEGGASLGVSFDVIQQASLEDMMSGNQGANSLASYDETALCSNTFRILKSMVV
GWVREITQYHNVYADNQVMHFYRWLHSPSSLLYDPALHRTLHNMMKKVFLQLIAEFKRLG
STVVYGNFNRIILCTKKRRIDDAIGYVEYITNSIHSKEIFHSLSISFSRCWEFLLWMDPA
NNGGVKGKLPSSILCGEEGVKAKTNTEGNEDGSEDEEEDEVNAQQDEEDAATDEVEDLIE
SNWNIMQYLPQSASCQNYFLMIVSSYIVAVYQSMKEELKRNIPGATPVKRRGSQISQQAM
GDLSALPGMITFSQEYVSTELTQNIFTITQKIQKKVTGTRNFTQPSEMFPVLPGSHLPLN
NPALEFVKYVCQVLSLDGNIVNQVNKLKRDLLRLVDVGEFSEEANFRDPCNSYILPEVIC
HNCNFCRDLDLCKDPSVAQDGAVLPQWFCSNCQAQYETESIEMALVEALQKKLMSYTLQD
LVCPKCKGVKEANMPLYCKCAGDFELTFSAKTFSEQVAVFRNIASHYNMSFLKETIDWLM
MMTPQMNQSDP
NT seq
6876 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttcaaaatagtgggagattcaaatcggaccagggtaaaagtggagatcaggag
aaccaggatgatggctcctcaatgtcggccctcaagaggctggagcgcagccagttcacg
gatgagatggacagtcgcttcggcttcgatcggatgaaagaacctggagagaaaactgga
tggttgatcaacatgcacccagctgagatcctggatgaagacaaaaggttgatcagtgtt
gtgaactattattttatccaggaggatggaagcaggtttaaggttgcgctccctttcaag
ccttatttttatattgctacaaaaaagagctgtgaaagagaagttatcttatatttgtca
agaaagttccaaggcagagtgtccaagcttgaaataatctcaaaagaggatctggacctg
cccaaccacctggtaggactgaagagaggctacattaagctgtccttcaatactgtggat
gacctcatcaaggtcaagcgggagatttccccagcggtacgcaaaaaccgagaaagagaa
cagtctaatgatgtctacacgtcaatgttatcaagtgcactatcaggtgggaatgtgact
tcagcagaggaagatgggatgtccaagaatatttcggaccaattagacaacattgtggac
atgagggagtatgacgtgccctaccacgtgcgcgtgtccattgacctaaagatccacgtg
gctcactggtacaatgttcgatacagaggcagtacttacccacccgagattgttcgcaga
gacgatcttgtcgaacgacccgaccctgtcgttttggcttttgatatagagaccaccaaa
cttccactaaaattcccagatgcagagactgatcaaatcatgatgatctcatatatgatt
gatgggcagggctttctaatcacaaacagagagattgtctctgaaaacattgaagacttt
gagttcacacccaaacctgaatatgaaggtcccttcactgtttttaatgagaatgatgag
atggcactcattcagaggttctttgatcacgttcaagagaccaaacctaacatctttgtc
acctataacggagacttctttgattggccttttgtggagacacgagcttccgtgcacgga
ctgaacatgcacagggagatcggcttccagaaagacagccagggagagtacaaatccact
caggccatccacatggacagttttaggtgggttaagagagatagctacctgccagtggga
agccataatctgaaggccgcagcaaaggctaaactgggctatgaccctgtggagctggac
ccggaggagatgtgccgcatggcaacggaggaaccacaaactttagccacctactccgtg
tcagatgctgtggccacatattacctttatatgaagtatgttcatcccttcatctttgct
ctgtgcactatcatccccatggagcccgatgaggtgttgcgtaaaggctctggcactcta
tgcgaagctctgctcatggtgcaggccttccacgccaacattgtcttccccaacaaacag
gagcaagtcttcaacaagctgacagacgacggccacgtcttggattctgagacttacgtg
gggggccacgtggaagcgttggaatctggagtgtttcgaagtgacattccctgccgtttc
aaaatgaatccagctgcgtttgactttttatgccagcgagttgagcaaacaatacgtcat
gccattgaagaagaggaaaaaatcccccttgagcaagtcaccaactttaatgaagtctgt
gaagatatcaaaaagaagctgacttccttgaaagaggttccaaacaggatagagtgtccc
ctcatataccatcttgacgttggagctatgtaccccaacattatcctcaccaaccgtcta
cagccttccgctatggtagacgcagccacttgtgctgcctgcgacttcaataaaccaggc
gccacttgtcaaaggaggatggcttggcactggagaggggaaatcatgcccgccagccgt
agtgagttccaccgtatccagcagcaactcgagtctgagaagttccctccgttcttcccg
aacggtccacctcgggcctttcacacactcaacagggaagaacaagctaagcatgagaaa
aaacgtcttgcagactattgcaagaaggcttataagaagatacacgtcaccaagctggag
gagcgagtcactaccatctgtcagagagaaaactccttctatgtggacactgttcgagct
tttcgagatcggcgatatgagtttaaaggtctacacaaggtgtggaagaagaaactgtcc
gcagctcaagacagtggagatgctgccgaggccaagcgctgtaagaacatggagatcctg
tatgactctcttcagctggctcacaagtgtatcctgaactcgttttacggctatgtcatg
agaaaaggggctcgttggtactcgatggagatggctggcattgtgtgctacactggtgcc
aatatcatcactcgggcaagagagctcatcgaacaaatagggaggccacttgaattggat
actgatggtatctggtgtgtccttccaaatactttcccggagaactttgttgtgaagact
agtaatgagaagaagcccaaggtgaccatctcttaccctggtgccatgctgaatatcctg
gttaaggaaggctttaccaacgagcaatatcacgagctggtagaccccgcgtcgctcacg
tataatatcagggcggagaacagcatcttcttcgaagtggacgggccgtatcttgccatg
attctgcctgcctctaaagaagaaggcaagaagttaaagaaaagatacgccgtattcaat
gaggacggctctctggctgagctgaagggttttgaagtgaagagaagaggagagctgcag
ctcatcaagatcttccagtcttccgtgtttgaagctttcctcaaaggtaccaccttggag
gaggtctacgcctctgtagccaaagtggctgactactggctagatgtgttgtacagcaag
gctgccaacatgccggatgctgagttgtttgacttgatatccgaaaatcgctccatgtct
aaaaaattggaggattacggagagcaaaagtccacttccattagcacagccaagagactg
gcagagttcctgggagaccaaatggtgaaagatgctggtcttagctgtcgttacgtcatc
tcacgaaagccagaaggagctcctgtgacggagagagctatccctttggctatcttccaa
gctgagtcgagcgtgaccaaacattttctgcgcaaatggctgaagatgcccagcctgcat
gactttgacatccgctcaattcttgattggagttactacattgaaaggctagggagcgca
atccagaaaattatcaccatccctgcagctctccaacaggtgaagaatccagttccccga
gtccgacatcccgactggcttcacaagaagcttcttgagaaaaacgatatctacaaacaa
aagaaaatcagcgagctgttcaccagtgagggcaagagacaggtggctcctatgcgccac
gacggccatcaagttcccgatatggaggactttgggacgccagctaagccgctgcagccg
gccatcctcatcagcaccaaaaggaagagaacttctcagggggaggacagccaggtggag
tctcaggatcttgagcttacccagtcgtggagagaggttttgggaccgccaccaccaatg
ggcaagacaaaagaggagcgtcttgtgtggttgcgttaccataagaaaaagtgggagctg
caaatgaagcagaggaaggaaagaaaaaaaaagcgaagactgctggatggtgaagcccaa
cctgttggcggaggattgatcagggatggccacaccacaggtctgggaagtttcctccgt
aaaacagctcgtagcatcctggatatgccttggcaagtcgtgcagattgcagaaacgagc
caccctggactttacaagttatgggctgtgattggaaatgacctccattgcatgaagctc
aacattcctcgcatcttctatgtcaaccaaaaagtcccgaaacaggaggagggaccaaca
tacaaaaaggtgaatcgcttgctccctcgctccaacatagtctactacctgtatgagtat
tgtgtgcccgaggacatgtaccaggagcacattaacgagatcaacgctgacctctcggcc
ccagacattgaaggggtttatgaaacacaggtgccgctactttttcgtgcgctggtgcag
ctcggatgtgtgtgtatggtcagtaagcgtgttgggagggatctggccggcagggaggca
gacacttttgatctggagaatctggatatgaagtctctggctcagttcagctacttggag
ccagggagtgttcgccacatgtacctttaccatcacagtcagggtcacaaggccttgttt
ggccttttcatcccttctcaacgcaaagccaacatctttattctggacactgtgcgaagc
aaccagatgccaaacctcagtaacgtctacactgctgaacgcactgccctgttggaaaaa
acaacagaggaccttctgcctccagaaaaacacaattttgaggttcgggctgaaaatgat
gtgaaggccatccaccgtgcactgcagcgtatacttctgagctacaaagaggagcgccgg
ggtccgaccctcatcgcagttcaatctaactgggagttgcgacgactgactacggggatg
ccagttttggacgaattcccggttgtgccggtgcatgttattgatgaaatcagttacaat
gtgctggactggcagcgacatggggctcggcgcatgatccgccactacctgaatctggac
agctacctatcgcaggcttttgacatggctcggtactaccacttacctgtaggaaacctg
ccccaggatgtgtcaatattcggttctgacttgttccttgctagacatctgcggaaacac
aatcacctgctatggctctctcccacagcaaggccagatttggggggcaaagaggcggat
gacagccgccttgttatggaaagtgatgatcggtgctctgttgagattaatgcccaaggg
tgctactccacagtgtgtgtggagctggacctgcagagcttggctgtgaacaccatcctc
cagtcgcagcatgtcaatgacatggagggaggagccagtctgggtgttagttttgatgtg
atccaacaggcgtctttggaggacatgatgtcaggaaaccaaggagctaactcactagct
agctacgacgagaccgccctctgctccaacaccttcaggatcttgaagagcatggtggtg
ggatgggtccgagagatcacacagtaccacaacgtgtatgcggacaaccaggtgatgcac
ttctaccgctggctgcactctcccagctcgctgctctatgaccccgcgctgcaccgcact
ttgcacaacatgatgaagaaggtcttcctgcagttgattgcggagttcaagcgtcttggc
tccactgtggtgtacggaaacttcaacaggatcatcttgtgcactaaaaaacggaggata
gatgatgccattggttatgtggaatacatcacaaatagcatacattccaaggaaatcttc
cactctttgtccatctccttttctcgatgttgggaatttttactgtggatggatccggct
aacaatggtggtgtgaaaggcaaacttccgtccagcatcttgtgcggcgaggaaggagtc
aaagcaaagacaaacacagagggaaatgaagatggtagtgaagatgaagaggaggatgaa
gtgaatgctcaacaagatgaggaagatgcagcgacggatgaagtggaggacttgattgag
agcaactggaatatcatgcagtatcttccgcaaagtgcttcctgccagaactacttcctc
atgattgtgtcatcttacattgtagcagtttaccaaagcatgaaagaagaactgaaacgc
aacatacctggtgcaacgccagtcaagaggcgaggcagccagatttcccagcaggccatg
ggggatttgagtgctcttcctggaatgatcactttctcccaggagtatgtgtccaccgag
ctgacgcagaatatttttactattacacaaaaaatccaaaaaaaagtgaccggtaccaga
aatttcacccagccctcggaaatgttcccggtcttgccaggctcacacttgccacttaac
aacccagctctggagtttgtcaaatatgtctgtcaggtcctctcactagatggcaacatt
gtgaaccaggtaaacaagctaaagagggaccttctgcgccttgtggatgtgggggaattt
tcagaagaagccaatttccgcgacccctgcaactcgtacatattgcccgaagttatatgc
cacaactgcaatttctgtcgtgacctcgacctctgcaaagacccgtccgtggcacaagat
ggcgccgtcttaccacagtggttttgctcaaactgccaagcccagtatgagaccgagtct
attgagatggctttggtggaagccctgcagaagaaattgatgagctacactttgcaggac
ttggtttgtcctaaatgcaaaggagtgaaagaagcaaacatgcccctctactgcaagtgt
gccggagactttgaacttactttctcagctaagaccttctcagagcaggtcgcagtcttt
cggaacattgcttcccactacaacatgagcttcctgaaggagaccattgactggttgatg
atgatgacgcctcagatgaaccagagtgatccttaa
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integrated database retrieval system
