Syngnathus scovelli (Gulf pipefish): 125994401
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Entry
125994401 CDS
T08785
Symbol
thoc5
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125994401 (thoc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125994401 (thoc5)
03041 Spliceosome [BR:
sscv03041
]
125994401 (thoc5)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
125994401 (thoc5)
Spliceosome [BR:
sscv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125994401 (thoc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
DUF2542
Motif
Other DBs
NCBI-GeneID:
125994401
NCBI-ProteinID:
XP_049619689
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All DBs
Position
3:17034193..17039525
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AA seq
684 aa
AA seq
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MSSDALKKRKAKVLRNEAATPEVKRGRGDGDQQDVRVYNEEVELDGRDPEDDFLQFKESC
EGLATLMGEIQKLKASGAKEGCAEVERKRLESCNQFMTLKKLNRLAHMRLKRGRDQTHEA
KQKVDVLHLQLQNLLYEVLHLQKEISKCLEFKSQHEEIELVSEEEFYKDAPQEISRPQLT
KNDPHQLTLARLDWELEQRKRLAETYKESQATKEKIQKSIEVKKEHLRSLQPGLNAIMQA
SLPVQEYLAVPVEQTQKHTEVAQHLPPPLYVLFVQANAYGQACDKNLVVTISGDVDEAKA
MSKPPEDSQDDDSDSDAEEEQEKTKRRRSTAGGHLDDKRREMLKRHPLSLSFDLKCKDGS
VLNLYFYYLINLNIMTVKAKISAATDLSTAISAGALVESETLLSCLYSNDHGRETPNPAN
RYQFDKVGIVSFVDYVEELGHPYKWVQNLGGLHFPSDTSDGVLVGSSLSASHMENTMKLL
RGRVLSRLALHKQFASLEHNIIPVTSECLHLFPAKIISRLAQWTTITHEEYMDLTFTRHV
TDAGLAKETDMYFIGVVERGTARLQAAVVLNPRYPEISPLFSLSLNWKGERSGRADDNLR
AMESEVNVFKNELQGPRPGYQLLTNQISRLCVCLDVYLETEEQDDGVEGPREFPREKMCL
RTVKGPNRLKPFKYNHPLGLFSHR
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccgacgcactcaaaaagcgaaaagcgaaggttcttcgcaacgaagcagcaact
ccagaggtgaagcgaggcagaggtgacggagaccagcaggatgtacgtgtctacaatgag
gaggtggaactggatggccgtgaccctgaggacgacttcctccagtttaaagaatcctgt
gaaggtttggccacactgatgggtgaaattcagaagctcaaagccagtggggcaaaggaa
gggtgcgctgaagttgagcggaaacgcttggagagctgcaaccagtttatgactctgaaa
aaactcaaccgtctggctcacatgcgtctcaaaagaggcagagatcagacacatgaggca
aagcagaaagtggatgtgcttcacctccagttgcagaatcttctgtatgaagtcctgcat
cttcagaaggaaatcagcaaatgtttggaattcaagtctcagcatgaagaaatagaactc
gtgagcgaggaagagttttacaaggatgcaccgcaggaaatttccaggccacaactcact
aaaaatgatccgcaccagctcacactggcacgattagactgggagcttgaacagagaaaa
aggttggccgagacatacaaagagtctcaggccaccaaagagaagatccagaagagtatt
gaggttaagaaggaacatctgaggagtttgcagcctggcctgaatgccatcatgcaggcc
tccctcccggtgcaagagtaccttgccgtgcctgttgaacagacccagaagcacaccgag
gttgctcagcacttgccaccacccctctacgtcctttttgttcaagccaacgcatacgga
caagcatgcgacaagaacttggttgtaacaatcagcggggacgtggatgaggccaaggct
atgtccaaacctccagaggattctcaagatgatgacagtgactcggacgcagaggaggag
caggaaaaaacgaagaggagacggtcaactgctggcggccacctggatgacaaaagacga
gagatgcttaagaggcacccactgtccctctcttttgacctgaaatgtaaagatggcagt
gtcctcaatctgtacttctactacctgataaatctcaacatcatgacagtcaaagccaag
atttctgcagccacagacctctccacagccatcagtgcaggggcgctggtcgaatccgag
acccttctcagctgtttgtactccaacgatcatggaagagaaacacccaatccagccaac
cgttatcagtttgataaagtcggtattgtttcttttgttgactacgtggaggagcttggt
catccctacaagtgggtccagaatcttggagggctgcattttcccagtgatacctcagat
ggtgtgcttgtgggcagctctttgagcgctagccatatggagaacaccatgaagcttctg
agggggcgggtcctgtcacgcttggctctacataagcagtttgcttcattagagcacaac
atcatccccgtcaccagtgagtgtttgcacctctttccagctaagattatttcccggtta
gctcaatggaccaccatcacccacgaggagtacatggacctgacttttacacgccatgtg
actgatgctggtctggcaaaagagactgacatgtactttattggagttgttgagcgaggc
actgctcgcctgcaggctgcggtggtgctgaatccccgttacccagaaatctctcctctt
ttctcactctctctcaactggaagggggagcgcagcggacgcgctgatgacaaccttcgg
gccatggagagtgaggtgaacgtgttcaaaaacgaactgcaggggccacgtccaggctac
cagctcttgaccaatcagatttcacgcctgtgtgtctgtctggatgtctatctggagaca
gaagaacaggatgatggtgtggaaggaccacgggagttcccccgcgaaaagatgtgcctg
cgtactgtcaagggtccaaatcgtctgaagccattcaaatacaaccatcctctgggcctc
ttcagtcatcgctaa
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