KEGG   Syngnathus scovelli (Gulf pipefish): 125994404
Entry
125994404         CDS       T08785                                 
Symbol
vps13a
Name
(RefSeq) intermembrane lipid transfer protein VPS13A isoform X1
  KO
K19525  vacuolar protein sorting-associated protein 13A/C
Organism
sscv  Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:sscv00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:sscv04131]
    125994404 (vps13a)
Membrane trafficking [BR:sscv04131]
 Endosome - Golgi transport
  Rab GTPases and associated proteins
   Rab associated proteins
    125994404 (vps13a)
SSDB
Motif
Pfam: VPS13_N VPS13_M VPS13_VAB VPS13_C RRM_fung
Other DBs
NCBI-GeneID: 125994404
NCBI-ProteinID: XP_049619692
LinkDB
Position
3:complement(22834947..22855331)
AA seq 3268 aa
MVFESVVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAVLRNLEIKENALSQLDIPFKVRAG
HIGQLELQIPWKNLYTQSVRATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKLKVAELENPTKEKQDTFVEKLVTQIIKNVQVKISNIHIRYEDDVTNPLCPLSFGVSLS
NLSLQTCDEDWKPTLLDENARLFYKLVQLDKLFAYWNVNSVLFSNYSPGKALQCLQNSLL
LKGSCPTDHDFIFRPISADAKLCMNPKSDMDFSSPKVDLMVNLREVTIELNRPQYVSILE
LLGSVDLMSRNLPYRKYRPEVLVHNNANVWWDYAITSILEVDVKPRLHMWSWPRIQRHRK
LVKHYRELYKIKITSKKPSEELLKELQEPEKTLDIFNITLARQQAEVEASKAGLRIYRPG
LKMEEEESQGWVSWMWNWGAEPDSQPKEVKSAGGGFDELLTSAEKARLYAAIGYSETAAN
SIYPKEFEDMKVQFHMEKLSVSIKDSKDKDEIIKLTVGELMSSLTQRSGAQAIKFTAELS
LFEVTGLASGRPAPTLLSSRTVGTGTGSPLLSLFFETNPLDQRANQRLFVESQPLEIIYD
AMTVNATAAVFRPPDDLQLDELTNATLMKLEQFRDRTATGLMYVIETQKVLDLKVNLLAS
YVIIPQTGFYDGTQNIVLLDLGHLQMSSQSKKNLPELSACSSTIEDIMQRAYDSFDIQLN
NLQFLFSKPDNNWKKARMQRQSPLHILEPVDLKMEFSRAMVVKDSRMAKYKLSGELPLLS
LRISDVKLRNVLELVESIPRPKTNPAPPNASAPPHSRSKQFTPQLSMKRRLQLADQRSSM
LFESCESISISSLGSEEDLFYDAPSSPVTGQQFLFDNPMPLRYADLNRRKGPALEERPKN
MTDFLMAFEISEFSVQLCRLTGSYQEVPVLHLEVEGLGTELKIRTFDMTSNTYLKEICLR
CPEYTDSQNKEIQLITTLDNTEVDMLTLEYINADKNGPEFKSLHNNTEKVIKVTFSSLDV
NLHTEALLNTMNYLSGLMPQSTQQEEPGQEELAVIPEEEKLEEGKKEATVAKRKIPKNSK
AAAVINMHLRADLHSLKVYIRGQTSMISEIRIEGLVSEVLMRKREMKVLANLKNIIVFDC
DETAFYKKAVSIADREVFAFQMINHTDATEGDAYLDMSQVDTSVTLTVGCIQVVFLNKFL
SSILAFVNNFQEAKEAVAEVTQQAAEKAASGVKELSERSTRVALNVRFKAPVIFVPQSSS
SPNVLVADLGFLAVKNHFAMQPSKSHSKIPPVVDIMEVKLTDLKMYRTTFVNGVFRGESN
LLQPISLEVEVQRNLSSNWYQSIPDIEITAHLMPLSLNLSQDDMVVIFRTLSENLSENSG
TVTASAPAPAEDSTSDKEQPSSGNADRPNGNTVVTAAVVETQKTVKLKTTMKGDFKIDSM
ALVLFKPNVNELLHLEPHNDELKLGEFTLGTISTSFTMYSDSSMKAAVRLSTCLLDDKRP
NSKTVSPRMMGMRPGTEKNMMVEVTYRQSHEGSALDTVVQDVYLCASMEFLLTVTDIFLN
AIKEGFAEKPRAKNIPAPVDNNNTPAQPEESIPAPTKVSKSKMNVVVRNPEIVFVADLTR
ADGPALVMTTQCEVVITNDEESSKMTADIKDLKVVACPFLREKRLHNVTTVLQPCQVSFQ
SCQTPTSPQTMDISINLLTLKVSPIIIKTVLSIHSALTPTQETTEALESPVPVNMWEKRG
WKELKLWFLEEQGEASTKAAAPLIPQGESLKMDIKSICVTLEAGVGHRTVPMLLAKSSFQ
GDVKNWSTLINLRSELNLEVHYYNEVVGVWEPLLEPLEDETRDGPGRPWRLEFNMKTKPL
KNVEWADEMDYNVPDYKTVIVISSMDQLNITLSKCGLAMLSNLGMAFAEAAKETAECFQK
DEAPFVVKNRLGLPVFVQYSDMFSPVATHSNDHTVELQDGQTLGMDYSVTTESDQFSAMT
SLNEKDYYIQPTPAGHTSASMIPLIKVGRRMYSVMHEVSGVTRFLVCQVYSSEGSKYIKI
RSPFQIINHFDIPFKVFEGSTYLGTSLPTEEFCVPLDSYRSELSLQPVTGEGGDQFECSE
GFSYDDMDLQQPKAHIEQRCRRSGNLGGVLTVNIVPVKDAVTFKDTGGVGDNFDVPFVLH
LWPCVLLRNLLPYPVTYKLNDGSECGPESTLNPGHSAQLHTAVIDRSSLDLCLIDYLAQD
WSAQYSLRSEQEEITFIVFQSLRLEEDDVCEGTERRRVELDVAVHVKYEQGQTVVAIHSP
YWMVNKTGRLLQYKADDIHRKHPLDYDMPLLFSFKPRYFLKNNKVRLMISESEHSDDFSL
DTVGSYGDVKCKGQYKDYLVGVKIDTSSFSLTRIVTFMPFYLLVNRTKQTIFICEEGQES
WTMVPPEQSAIPFWPENDAKLVKVKVEGCLSPPRVINFSRPENCLLLHLDNNVGGIIVDV
NVAEHSATIRFSDYHDGAAPFLIINHTKDQTLQFYQSIQTESAWVPNELLDLSFSVDEDS
SQKPEEVEELEAGKAVHYTWNKPTGSRELCWMCGKYSGKLKSEEDLHEDLGEEGKLFVVS
LYEGLQRTVLFTEERRIYNLLCESEKAQLAQQEIVLSLYNVGVSLVNNSSGQEVSYIGIT
SSDVVWELKPKKKNRWKPMSAEVAKMLEKHFKQYIESGPVDKAIVDLDNSFQVCLSPNGT
DMRLLQPCDAPLRRHFLPAVNVEYRVSPRQSAYRVQIHHIQIQNQLPGAIFPFVFYPVKL
PKSVTMDSEPKPLTDLSIVTRAAGHSNISRIKYFKVLIQEMDLKLDLGFLYAILDLFTPE
DANITSVQQEVELFEKDVEYIKNELNHVSAADNTPISLYEYFHISPIKLHLSFSLSTGGE
DGLKEKRERELIPVQSLNLLLKSIGATLTDVQDVVFKLAFFELTFQFRTTQQLQWEVVRH
YSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQGPEEFVEGMALGVK
ALVGGAVGGIAGAASRITGAMAKGVAAITMDEEYQQKRRETMNKQPSSIREGLTRGGKGL
VSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRA
AETSQDIQSLRPPRFIHEDGVIRPYKQREGIGSQMLQKIENGRFAKYRYFAHAKVNDSDF
LMITKKGVFFVTTGTFGQLICEWQYLFDEFTKAPTIVENRRLRIEAKERVKSVFHAKEFG
KIINFKTPEIATWVLAKLEDARDSLPKY
NT seq 9807 nt   +upstreamnt  +downstreamnt
atggtcttcgaaagcgtcgtggtagacgttctcaacagatttctgggcgactacgtggtc
aaccttgacagttcgcagcttaaacttggcatctggggaggtgatgccgtccttcgaaat
cttgaaattaaggagaatgctttgagtcagcttgacattccttttaaagtgagagcagga
cacatagggcaactagaactccagattccctggaagaacctttacacccagtcggtgcgg
gctacactggatggcgtctatctgctcattgtgccaacagcaagtatcaagtacgatgcg
gaaaaggaggagaagcagctgcaggaagcgcggcaaagggagctgcaaaggattgaggag
accaaactgaaggtcgcagagctcgagaatcccacaaaagagaagcaggacacctttgtg
gagaagctggtcacgcagatcatcaaaaatgttcaagtcaagatctctaatatccacatt
cgctatgaggacgacgtcaccaatccgctgtgccctttgtccttcggagtctctcttagc
aacctcagccttcagacctgcgatgaggactggaagccgactctcttggatgaaaatgcc
agacttttctacaagttggttcagctggacaaattgtttgcctactggaatgtcaactct
gtactcttctccaattacagcccgggcaaggctttgcaatgtcttcaaaatagcctgctc
cttaaaggctcctgtcctacagaccacgatttcattttccgtcccatctctgccgatgca
aagctttgcatgaatcccaaatcagacatggacttctcttctcctaaagtagaccttatg
gtcaatctgcgggaggtgaccattgagctaaacagaccccagtacgtcagcatcttggag
ctattgggctcggtggatttgatgtcacgtaacctgccgtacagaaaatacagacccgaa
gttttagttcacaacaatgccaacgtttggtgggactacgccatcacgagcatcctggag
gtggacgtgaagccccgactccacatgtggtcgtggccgcgcattcagcggcaccgcaag
ctggtcaagcactaccgcgagctctacaagattaagatcaccagcaagaaacccagcgag
gaacttctcaaggaactgcaagagcccgagaagacacttgatatttttaacatcacgcta
gccagacagcaagctgaagtggaggcgagtaaggcgggcttgcgtatttaccgtccaggc
ttgaagatggaggaagaggagtctcaagggtgggtgagctggatgtggaactggggggcg
gagcctgactctcaaccaaaggaggtcaagagcgcaggaggaggatttgatgagctgttg
acctccgctgagaaagccagactctacgccgccatcggatacagtgagacggccgctaat
tctatttatccaaaggagtttgaggacatgaaggtgcaattccacatggagaagctgagc
gtctctatcaaggacagcaaagacaaagacgagatcatcaagttgactgtcggggagctg
atgtcttccctgacgcaacgatccggagcacaagccatcaaattcacagccgagctcagt
ttgttcgaggtcacgggtctggcaagcggccggcccgctcccaccctcctgtcgtcaagg
acggtcggcacgggaacggggagtccgctgctcagcctgtttttcgagaccaaccctctg
gatcagcgtgccaatcagcggctctttgtagaatcgcagccgctggaaatcatctacgac
gccatgacggtgaacgccacggccgcggtcttcaggcctcctgacgacctgcagctggac
gaactcaccaacgccacactcatgaaactggagcagttccgagatcgtacagccaccggg
ctaatgtatgtgatcgagactcagaaggtgctggacctgaaggtgaacctgttggcctct
tacgtcatcatcccacagacgggcttctatgacggcactcagaacattgtgttgctggat
ctcggacacttgcagatgtccagtcagtccaaaaagaatctgcctgagctgtcggcgtgc
tccagcacaatcgaagacatcatgcaaagagcgtacgacagcttcgacatccagctcaat
aacctgcaattccttttcagtaaaccagacaacaactggaaaaaggctcgcatgcagagg
cagtcgccgctccatattttggagccggtggatttgaaaatggagttcagcagggccatg
gtggtcaaagactcgcgcatggcaaaatacaaactgtccggagagctccctctgctctcc
ctccgaatctccgacgttaaacttcgaaatgttctcgagttggtggagagcatcccgcgg
ccgaagacgaatccggctccgcccaatgctagcgcgcccccgcattcgaggtccaagcag
ttcacaccgcagctttccatgaagagacgtctgcagttggccgaccaacgctcctctatg
cttttcgagtcgtgcgagtccatcagcatttcttcgctcgggtccgaagaagacttgttc
tacgacgcccccagctctcccgtcacggggcagcagttcttattcgacaatcccatgccg
ctgcgctacgccgacctgaacagacggaagggtccggcgctggaggagcgtccgaagaac
atgaccgactttctcatggcatttgaaatcagcgagttctccgtccagttgtgtcgcctc
actggtagctatcaggaggtgcccgtgctccacttggaggtggagggcctgggcactgag
ctgaaaatacgcacctttgacatgacatccaacacttacctcaaggagatctgtctcagg
tgtcccgaatacacagattcgcaaaacaaggaaattcaactcatcactactttggataac
accgaggtcgacatgcttacgctggagtatataaatgctgacaaaaacgggcctgagttc
aagtccctgcacaacaacaccgagaaagtcatcaaggtgaccttctcgtctctggacgtg
aatctccacacggaggcgctcctcaacaccatgaactacctcagcggactgatgccgcag
tccacccagcaggaggagcccggacaggaggagttggccgtcattcccgaggaagagaag
ctggaggagggcaagaaggaggccaccgttgccaagagaaaaataccaaagaattccaag
gcggcggccgtcatcaacatgcacctccgagccgatctccactctctgaaggtttacatt
cgagggcagacatccatgatctcggagatcagaatcgaaggcctggtttctgaggttttg
atgaggaagcgagagatgaaggtcctggccaatctgaagaacatcatcgtgtttgactgt
gacgagacggccttctataagaaggccgtgtccatcgcagacagggaggtgtttgccttc
cagatgatcaaccacacagacgccacagaaggcgacgcctacctcgacatgtctcaggtt
gacacctcggtcacgttgacagtgggatgtatccaagtcgtcttcctcaacaagttcttg
tcctccatactggccttcgtaaacaacttccaggaggccaaagaggctgtcgccgaagtg
acccagcaggcggccgaaaaggcggcgtcgggcgtgaaggagctgtcggagcgcagcacg
cgcgtggccctcaacgtccgcttcaaagcgcccgtcatttttgtgccgcagtcgtcctcg
tcccccaacgtcctggtggccgatttaggtttcctggcggtcaagaatcactttgccatg
caaccttccaagagtcacagcaagatcccaccggtggtggacatcatggaagtcaagctc
acggatctaaagatgtatcggacaacattcgttaatggagtgtttcggggtgaaagcaac
ctgttgcaaccaatcagcctggaagtggaggttcagaggaatctttcgtccaactggtac
caaagcatccccgacattgagatcaccgctcacctgatgcctttgagtttgaacctcagc
caggatgacatggtggttatcttccggactctcagtgaaaacctctcggagaattctggc
actgtcaccgcctctgcgcccgcccccgctgaagactccacatctgacaaggagcagccc
agctccggaaacgcagacagacccaacggcaacacggtggtgacggcagccgtggtggag
acgcagaagaccgtcaagctgaagactaccatgaaaggagactttaagattgactccatg
gcgctggtcctgttcaagcccaacgtgaacgagcttctccatttggagccgcacaacgat
gaactgaaactcggcgagttcaccctgggcaccatctccacctccttcaccatgtactcc
gacagctccatgaaggccgccgtccgattgtctacctgcctcctcgatgacaagaggcca
aatagcaagacggtcagcccgaggatgatgggcatgcgtcccggaacggaaaagaacatg
atggtggaggtcacctaccggcagagccacgaaggcagcgccttagacacggtggttcaa
gacgtgtacctgtgcgccagcatggagttcctcctcaccgtgacggatattttcctcaac
gccatcaaggagggttttgccgaaaagccgcgagccaagaacatcccagcgccggtagat
aacaacaacacccccgctcagccagaggaatcaattcctgctccaaccaaggtgtccaag
tcaaagatgaacgtggtggtgcgaaacccggagatcgtttttgtggccgacctgacgcgc
gccgacgggccggcgttggtgatgaccacgcagtgcgaggtagtcatcacaaacgacgag
gagagctcaaagatgacggccgacatcaaagacctcaaggtggtggcctgcccgttccta
agggagaagaggcttcacaacgtgaccacggttttgcagccatgccaggtgtcctttcag
agttgtcagacgccgacgtctccgcaaactatggacatctccatcaacttgctcacactc
aaggtttcacccattatcatcaagacggtcctctccatccactcggccctgacacccacc
caagagaccacggaggcgctcgaaagtcccgtccctgtgaacatgtgggagaaacggggc
tggaaggagctcaaactgtggttcctggaggagcagggagaagccagcacgaaagctgcg
gccccgttgattccacagggggagtcgcttaagatggacatcaaatcaatctgcgtgacg
ttggaggccggggtggggcaccgcaccgtgcccatgcttctagcaaaatcctccttccaa
ggagatgtcaaaaactggtccacgctcatcaacttgaggagtgagctgaacttagaggtc
cattactacaacgaggtggtgggagtgtgggagccgctgctggagccattagaggatgag
acgagagatggacccgggagaccctggagactggaatttaacatgaaaacaaagccctta
aagaacgtggagtgggcagatgagatggactacaacgtcccagactacaagactgtcatt
gtgatcagcagcatggaccagctcaacatcaccctctccaaatgtggccttgccatgctg
agcaacctgggcatggctttcgccgaggccgccaaggagacggccgagtgcttccagaaa
gacgaggctccgtttgtcgtaaagaaccgcctgggcctgcccgtgtttgtccagtacagc
gacatgttttcccccgtcgccacgcacagcaacgaccacacggtcgagctgcaggacggc
caaacgctcgggatggactactccgtcaccaccgaatcggaccagttctcggcaatgacc
tccctgaacgaaaaggactactacatacagccgactccagcgggccacacgtccgccagc
atgatccccttgatcaaggtcggacggagaatgtacagcgtcatgcacgaggtgtcgggg
gtcacccgcttcctggtgtgtcaggtttattcctcggaaggcagcaagtacatcaagatc
cgctcgcctttccagatcatcaatcatttcgacatcccctttaaagtgttcgagggctcg
acgtatttgggtacgtcgttaccgacggaggagttttgtgtccctctggactcgtacagg
tctgagctgagcctccagcccgtcacgggtgaaggtggcgaccagtttgagtgctctgag
ggcttcagctacgacgacatggacctccagcagcccaaagctcacattgagcaacggtgc
cgccgcagcggcaacctgggcggcgtgctgacggtcaacatcgtgcctgtgaaggacgcg
gtgacgttcaaagacactggcggcgttggggacaactttgacgtgccctttgttctccat
ttgtggccttgcgtcctgctacgaaatctgctaccataccccgtcacctacaaactcaac
gacggtagcgagtgcgggccggagtccacgctcaacccgggccactccgcccaacttcac
actgccgttatcgaccggtccagcctggacctctgcctgattgactacctcgctcaagac
tggtctgctcagtacagcctccgcagcgagcaggaggagatcaccttcatcgtgttccag
tccctccgcctggaggaggacgacgtctgcgaggggacggagaggcggcgggtcgagctg
gacgtagccgtgcacgtcaagtacgagcagggccagacggtggtggccatccactcgccg
tactggatggtgaacaagacgggcaggctgctgcagtacaaggcggacgacatccaccgc
aagcacccgctggattacgacatgccgctgctcttctccttcaaacctcgttacttcctg
aagaacaacaaggttcgcctcatgatctcggaaagcgaacactccgacgatttttccctg
gacaccgtcgggagctacggagatgtgaaatgcaaaggccagtataaagattatctggtt
ggggtgaagatcgacaccagcagcttcagtctcacccgcatcgtgaccttcatgccgttc
tacctgctggtcaaccggaccaagcagaccatctttatatgcgaggagggccaggagagc
tggaccatggtcccgcctgaacagtccgccattcccttctggccggaaaatgatgccaaa
ctcgtgaaagtgaaagtagaaggttgtctgtctccgccacgcgtgatcaacttctcgcgt
ccggagaactgcttattgctgcacttggataacaacgtgggcgggatcatcgtcgacgtc
aacgtagcggagcactcggccaccatccgattctccgactaccacgatggcgcggcccct
ttccttattatcaaccacactaaagaccaaactttgcagttctatcagagcatacagaca
gagtcagcatgggtgcccaatgagctgctggacctctctttctcagtggatgaggacagt
tcccagaagcccgaagaagtggaagagctggaggcggggaaagccgtgcattacacttgg
aacaagccaacgggttcccgggaactttgctggatgtgcggcaaatacagtgggaagctt
aaaagcgaagaggatctgcatgaggacttgggggaggaaggcaaactttttgtcgtctcc
ctctacgaaggtcttcagcgcacggtgctgttcaccgaggagcggcgcatctacaatctg
ctgtgcgagagcgagaaggcacagttggcccagcaggaaatcgtactttcgctctacaac
gtgggcgtttcgctggtcaacaacagcagcggccaggaggtctcctacatcggtatcacc
agttctgatgtggtgtgggaactgaagcccaagaagaagaaccgctggaagcccatgagc
gccgaggtggctaagatgttggagaaacacttcaagcagtacattgaatccgggcctgtc
gacaaagccatcgtcgacctggataacagcttccaggtgtgcctgtcacccaacggaaca
gacatgcgattgctgcagccgtgcgacgcccctctcagaaggcactttcttccggccgtc
aatgtggagtaccgcgtctcgcctcgccagagtgcctaccgggtccaaatccatcacatc
cagatccagaatcagctcccaggagccatcttccccttcgttttttacccggtgaagctt
ccaaagtccgtcaccatggattcagaacccaagcctctgactgatctcagcattgtcacc
agggcagcaggccactctaacatctcccgcatcaagtacttcaaggtgctgatccaagaa
atggatctgaaactggatctgggcttcctctatgcaatcctggacctgttcaccccagag
gatgccaacatcaccagcgtccaacaggaggtggaactttttgagaaagatgtggagtat
ataaagaatgagctgaaccacgtttccgccgctgataacacgcccatcagcctttacgag
tacttccacatttcccccatcaagctccacttgagtttctctctgagcacgggcggcgag
gacggcctgaaggaaaagagggaaagggaactcatccccgtgcagtcactcaacctgttg
ctcaagagcatcggcgccacgctcaccgatgtgcaagatgtcgttttcaagcttgctttc
tttgagttgacgttccagttccgcaccacccagcagctccagtgggaagtcgtcaggcat
tactccaaacaggcaatcaagcaaatgtatgtgctggtgctgggcctagatgtgttgggt
aatcccttcggtctgatccgagggctgtctgagggagtggaggccttcttctacgagccc
tatcagggcgcgatccaggggccggaggagtttgtggaagggatggcgctcggagtgaag
gccctcgtaggaggagctgttgggggcatagcaggtgctgcctccaggatcacgggcgcc
atggccaagggcgtggccgccataaccatggatgaagagtaccagcagaagaggcgagaa
accatgaacaagcagcccagtagcatccgagaggggctcaccaggggtggcaaaggattg
gtctcgggatttgtcagcggaataacaggcattgtcaccaaacccattaaaggagcccaa
aaggaaggcgcggcgggcttcttcaaaggagtcggcaaaggcctggtgggtgccgtcgcc
aggcccaccggaggcatcatcgacatggccagcagcaccttccaaggcatcaagagggcg
gcagagacatcgcaggacatccagtccctgcgcccccctcgcttcatccacgaagacggc
gtgatacggccgtataagcagagggagggcatcggaagtcaaatgcttcagaaaatcgag
aacggtcgttttgctaagtaccgttactttgctcacgctaaagtcaacgactcggacttc
ctcatgatcaccaagaagggtgttttcttcgtaaccacgggcacattcggtcagctcatc
tgcgagtggcagtacttgtttgacgagttcaccaaggcgcccaccattgtggagaaccga
cggctgcgcatcgaggccaaggagcgagtcaagtcggtgtttcacgccaaagagttcggc
aagatcattaacttcaaaacgcccgagatcgccacgtgggttctggccaaattggaggac
gccagggacagtttaccgaaatattga

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