Syngnathus scovelli (Gulf pipefish): 125994672
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Entry
125994672 CDS
T08785
Symbol
lsm1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125994672 (lsm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125994672 (lsm1)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125994672 (lsm1)
mRNA degradation factors
5'-3' decay
Lsm complex
125994672 (lsm1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
125994672
NCBI-ProteinID:
XP_049620038
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Position
3:complement(14999391..15001274)
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AA seq
133 aa
AA seq
DB search
MNYVPGTASLIDEIDKKHLVLLRDGRTLIGYLRSIDQFANLVFHQTVERIHVGKKFGDIP
RGIFIVRGENVVLLGEIDVDKPCDTVLQQVSIEEILEEQRLKQQTKQEMEKVKMQVLKDR
GLSIPKADNLDEY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaactacgtacccgggacagctagtctcatagacgagatcgacaaaaaacatctggtt
ctcctccgagatggtcgaacactcatcggatacctcagaagcattgaccaattcgctaat
ttagttttccatcagacagttgaacgtatccacgtgggcaagaaatttggtgacatcccc
agaggaatcttcattgtgcgaggagaaaatgtggtgctgcttggcgaaatagatgtggat
aaaccttgtgacacagtcctgcagcaggtctccattgaggagattctggaggagcagcgg
ttgaagcaacaaactaagcaagagatggagaaagtgaagatgcaagtcctgaaagacaga
ggcctctccatccccaaagctgataacctggatgaatattaa
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integrated database retrieval system
