Syngnathus scovelli (Gulf pipefish): 137839498
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Entry
137839498 CDS
T08785
Name
(RefSeq) ATP-dependent RNA helicase DHX8 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137839498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
137839498
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137839498
Spliceosome [BR:
sscv03041
]
Complex C
Other components
Step II factors
137839498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
GIPC1_GH2
AAA_16
T2SSE
Flavi_DEAD
TsaE
PhoH
Sigma54_activ_2
DUF7407
ABC_tran
Motif
Other DBs
NCBI-GeneID:
137839498
NCBI-ProteinID:
XP_049615340
LinkDB
All DBs
Position
21:complement(6991270..6997190)
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AA seq
1202 aa
AA seq
DB search
MADVDVDELSQLEFLSLVSKVCTELDNHLGISDKDLAEFVISLAEKEPTFDGFKALLLKN
GAEFTDSLIGNLLRLIQTMRPPSKSSTSKAASEVQKPLSGKDKLKELFPALCRPNEAPPK
IMDEEDVKVAADAMKELEMFMPSVSSTDSKSERSRVEKSRRRSRSRSRDRHRHRDRDRDR
RRRHHSRSRSRSRSRDRDRHRDSERSRRRERSSRWSERSPSPRRDQDRDWKDKHVDRPPP
EEPSVGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRV
KIKVLSFTGSKTSLSMKDVDQETGEDLNPNRRRNVGPDGSDEVTMRNPDGPSNLNLGPAR
ELEQDDTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPDFDDETGILPKVDDEEDEDLE
IELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAKERRELKQAAREAEM
DSIPMGLNKHWVDPLPDADGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQLSI
LEQRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTTRGKIGCTQP
RRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDSELGQ
YAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDAVKFSQYFYEAPIFTIP
GRTYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMK
SLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPG
FVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVP
EIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGR
RMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQP
EGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGK
ATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTT
KEYMREVTTIDPRWLVEFAPAFFKVSDPTRLSKQKKQQRLEPLYNRYEEPNAWRISRAFR
RR
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgtcgatgtcgacgagctttcccagctcgaatttttatctttggtgtccaaa
gtgtgcacggagctcgacaaccatcttggaatcagcgacaaagatttagctgaattcgtc
attagcctcgcggaaaaagaacccacctttgacgggtttaaagctcttctgctaaaaaat
ggagccgaattcacagactctctcattggcaacttgctcaggctcattcagaccatgaga
cccccgtcaaagtcgtccacaagtaaagcagcttctgaagttcagaagccgttgtcgggg
aaggacaagctgaaggaacttttccctgcgctttgcagaccaaatgaagctccaccgaaa
atcatggatgaagaggacgtgaaggtcgcagctgacgccatgaaagaactggagatgttc
atgcccagcgtgagcagcaccgattccaaaagcgagcgtagccgcgtggaaaagagcaga
cggcgcagtcggagcagaagccgggaccgacacagacaccgggatcgggacagggaccgc
aggaggcgccaccactcacgctccaggtccagatctcgctccagagaccgcgatcgccac
agagatagcgaacgctcaagacggcgagagcgatcttcccgctggagcgaacgctcgcca
agcccccgaagagaccaagaccgagactggaaggacaagcatgtggaccgtccgcccccg
gaggaaccctctgtgggcgacatctacaatggaaaggtcaccagcattatgcagtttgga
tgctttgtccaactggagggcctcaggaaacgatgggaaggtttggtgcacatttctgag
ctgcgccgagaaggccgagtggccaacgtggccgacgtggtcagtaaagggcaaagagtc
aagatcaaagtcttgtccttcacgggctccaagaccagcctcagcatgaaagatgtggat
caggagacgggcgaggacctgaaccccaacaggaggaggaacgtggggcccgacggcagc
gacgaggtgaccatgagaaaccccgacgggcccagcaacctcaaccttggccccgctcgc
gaactggagcaggatgacacgctggagaggaagaggctcactaagatatcggatccagaa
aaatgggagatcaagcagatgatcgccgccaacgttttatccaaggaagaattccccgat
ttcgacgacgagacggggatccttcccaaagttgacgacgaagaagacgaagacttggaa
atcgagctggtggaagaggagccgccgttcctgagagggcacaccaagcagagcatggac
atgagccccgtcaaaatcgtcaagaatcccgacggctcgctgtcccaggcggccatgatg
cagagcgccctggctaaagagcgacgggagctgaagcaagcggcgcgcgaagccgagatg
gactccatccccatgggcctcaacaaacactgggtggacccgcttcccgacgccgacggc
cggcagatagcggccaacatgcgcggcatcggcatgatgcccaacgacatccccgaatgg
aagaagcacgctttcggcggcaacaaggcgtcctacggcaagaagacgcagctctccatc
ttggagcagagggagagtttgcccatctataaattgaaggagcaactcgttcaggccgtc
cacgacaaccagatcctgattgtgatcggggagaccggttcggggaagaccacgcagatc
acgcagtacctggcggaggcgggctacaccacccgggggaagatcggctgcacccagccc
cgtcgtgtggccgccatgtctgtcgccaagagggtctccgaggagtacggctgctgtctc
ggacaggaggtgggctacaccatccgctttgaggactgcaccagccccgagacggtgatc
aagtacatgacggacggcatgctgctgagggaatgtctgatcgactcggagctcggtcag
tacgccatcatcatgctggacgaagctcacgagaggaccatccacaccgacgtcctcttt
ggtctgctcaagaagacggtgcagaagcgcacggacatgaagctgatcgtgacttcggcc
acgctggacgccgtcaaattctcccaatacttttacgaggcacccatcttcaccatcccg
gggaggacgtacccggtggaagtgctctacaccaaagagcccgagaccgactacttggac
gccagcctcatcaccgtcatgcagatccacctaaccgaacctcccggtgacatcctggtc
tttctgaccggacaagaagagatcgacacggcctgcgagatcctctacgagcgcatgaag
tcacttggccccgacgttcccgaactcatcattctgcccgtttattccgcgctgccgagc
gagatgcagaccaggatcttcgacccggcgccgcctggcagcagaaaagtcgtcatagcg
accaacatcgccgagacgtcgctgaccatcgacggcatctactacgtggtggaccccggc
ttcgtcaagcagaaagtctataactctaagactggcatcgaccagctggtggtgacgccc
atctcgcaggctcaagcgaagcagagggcgggccgcgccggcaggacgggccccggaaag
tgttaccgcctgtacacggagcgagcgtacagggacgagatgttgaccaccaacgtgccg
gagatccagaggaccaatctggccagcacggtgctctcgctcaaggccatgggcatcaac
gacctgctctccttcgacttcatggacgctccccctatggagacgctgatcacggccatg
gagcagctgtacactttgggggcgctggacgacgaggggctgctcacgcgactgggaagg
aggatggcggaatttcctctggagcctatgttgtgcaagatgctgatcatgtccgtgcac
ctgggctgcagcgaggagatgctcaccatcgtgtccatgttgtccgtgcagaacgtcttc
tacaggcccaaggacaagcaggccttggcggaccagaagaaggccaagttccatcagccc
gagggcgaccatctcaccttgctggctgtctacaactcgtggaagaacaacaagttctcc
aacccttggtgctacgagaactttatccaggctcgctcgctgaggagagcgcaggacatt
cgcaagcagatgttgggcatcatggaccgacacaagttggatgtggtgtcttgcggtaag
gccactgtgcgagtccagaaggcaatctgcagcggtttcttccgcaacgccgccaagaag
gaccctcaggagggctacaggaccctcatagaccagcaagtggtctacatccacccttcc
agcgctttgttcaaccgccagcctgaatgggtagtgtaccacgagctggtgctgaccacc
aaggagtacatgcgtgaggtgaccactatcgacccacgctggttagtggagtttgcgccc
gccttcttcaaggtgtccgacccgacacgcctcagcaagcagaagaagcagcagcgcctg
gagcctctctataaccgttacgaggagcctaacgcttggaggatctccagagccttcagg
agacgctga
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integrated database retrieval system
