Staphylococcus schleiferi 2317-03: RN70_08765
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Entry
RN70_08765 CDS
T04520
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sscz
Staphylococcus schleiferi 2317-03
Pathway
sscz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sscz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RN70_08765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscz03019
]
RN70_08765
Messenger RNA biogenesis [BR:
sscz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RN70_08765
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AKS73988
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Position
1861774..1863459
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AA seq
561 aa
AA seq
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MKQLQKNEVGVYALGGLGEVGKNTYAVEYRDEIVIIDAGIKFPDDSLLGIDYVIPDYTYL
EQNQDKIVGLVITHGHEDHIGGVPYLLKKINVPIYSGPLALGLIRNKLEEHHLLRQANLN
EITEDTVIESKYFKISFYLTTHSIPETYGVVVDTPEGKVVHTGDFKFDFTPVGAPANIGR
MAKLGDEGVLCLLSDSTNSLVPDFTLSEREVGQNVDKIFRNCTGRIIFATFASNIYRVQQ
AVEAAVKYNRKIVTFGRSMENNIKIGTELGYVKAPPETFVEPSKINSIPKHELLILCTGS
QGEPMAALSRIANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINALYQAGAEVIHSKI
SNIHTSGHGSQGDQQLMLRLIRPKFFLPIHGEYRMLMAHGQTGIDCGVKEENVFIHDIGD
VLALTRDSARKAGRIPSGTVLVDGSGIGDIGNVVIRDRKLLSEEGLVIVVVSIDFNTNKL
LSGPDIISRGFVYMRESGQLIYDAQKKIKQDVINKLNNNENIQWHQVKSSIIETLQPYLY
EKTARKPMILPVIMKVNDKTK
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaacttcaaaaaaatgaagtgggcgtctatgcgttaggcggcttaggtgaagtc
ggtaaaaatacttatgccgttgaatacagagacgaaatcgtaatcattgatgcaggtatc
aaattccctgacgatagtttacttggtatcgattatgttataccagattatacgtatctt
gagcagaatcaagataaaatcgtgggattagtaatcacacatggtcacgaagaccatatc
ggtggtgtgccctacctgcttaaaaagattaacgtaccaatttatagcggaccgcttgca
ttaggtcttattcgtaataaattagaagaacatcatttgttacgtcaagctaatttaaac
gaaatcacagaagatacagtgatcgaatctaaatatttcaaaattagtttctaccttaca
acacacagtataccagaaacttatggtgtcgttgttgatacacctgaaggtaaagttgta
cacacaggcgactttaaatttgattttacgcctgtaggtgcccctgccaatattggtaga
atggcaaaactgggtgatgaaggggtcctttgtttactttctgactccacgaactccctt
gttcccgacttcactttaagtgaacgtgaagtgggtcaaaatgttgataaaattttccgt
aattgtactggacgtatcatctttgcaacatttgcatctaatatttaccgtgtccaacaa
gcggttgaagctgctgtaaagtacaatcgaaaaatcgtgacatttggtcgatcaatggaa
aacaatattaagatcggtaccgaactcggttatgttaaagcaccacctgaaacttttgta
gaaccaagtaaaattaatagtattccaaaacacgaattacttattttatgtacgggttct
caaggtgagcctatggccgctttatctcgaatcgctaatggtacgcataagcaaattaaa
attattcctgaagatacagttgttttcagttcttcaccaattccaggtaatacaaaaagc
attaatcgcacgatcaatgcactttatcaagcgggcgcagaagtgattcatagtaaaata
tcaaatattcacacttctggacacgggtctcaaggtgatcaacaattaatgttacgcctt
attcgacctaagttcttcttacctattcatggtgaatatcgtatgctaatggcacatggt
caaacgggtattgattgtggtgtcaaagaagaaaatgtttttattcatgatataggtgat
gtgcttgcgcttacacgtgatagtgcacgtaaagcaggtcgtatcccatcaggcacagtc
cttgtcgatggtagcggtattggtgatatcggcaatgttgttattagagaccgtaaactc
ttgtctgaagaaggactagttattgtcgttgtgagtattgattttaatacgaacaaactt
ttatcaggccctgatattatttcacgcggtttcgtatacatgcgtgagtcaggccaatta
atctatgatgcacagaaaaaaatcaaacaagatgtgattaataaattgaataacaatgaa
aatattcaatggcaccaagttaaatcttctattattgaaacattgcaaccttatttatat
gaaaaaacagcaagaaaacctatgattttacccgtcatcatgaaagtaaatgataaaaca
aaataa
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