Staphylococcus schleiferi 2317-03: RN70_10105
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Entry
RN70_10105 CDS
T04520
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sscz
Staphylococcus schleiferi 2317-03
Pathway
sscz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sscz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RN70_10105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscz03019
]
RN70_10105
03016 Transfer RNA biogenesis [BR:
sscz03016
]
RN70_10105
Enzymes [BR:
sscz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RN70_10105
Messenger RNA biogenesis [BR:
sscz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RN70_10105
Transfer RNA biogenesis [BR:
sscz03016
]
Prokaryotic type
tRNA degradation factors
RN70_10105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
S1CSD-TOTE-2
RNase_II_C_S1
Rho_RNA_bind
OB_Dis3
OB_cyt-4
Motif
Other DBs
NCBI-ProteinID:
AKS74227
LinkDB
All DBs
Position
complement(2126041..2128395)
Genome browser
AA seq
784 aa
AA seq
DB search
MNLKEEIKAIIQSADYEPMSVSDFQDALGLNSADSFRDLIKILVELEQSGMVTRTKQDRY
QKRGPKPGIVRGTLSQNKKGFAFLRPEEEDMEDIFIPPTKINRAMDGDTVIVEVKKSRGD
FRKGKFEGEVKAIESHSIKQVVGTFSEARHFGFVVPDDKRIMQDIFIPKGQDLGAIDGHK
VLVQITKYSDGTNNPEGQVSAILGHKNDPGVDILSIIYQHGIEIEFPDDVLKEAERIPET
IQPSELEGRQDLRQDLTITIDGADAKDLDDAIAVKKLDHGNTELTVSIADVSYYVKEGSA
LDREAYDRSTSVYLVDRVIPMIPHRLSNGICSLNPNVDRLAMSCRMVINPEGKVIKHEIF
DSVIHSNARMTYEAVNRIITDRDPETRQKYRELVPMLDLAKKLSQTLIDMRKKRGEIDFD
IKEAKVLVNEEGIPKEVVTRERGEGERLIESFMLIANETIAEHFSKMEVPFIYRVHEQPK
SERLRQFFDFITNFGIMIQGTGEDIHPSTLQSISEEIAGRPEDMVISTMMLRSMQQAHYD
AENLGHFGLAADYYTHFTSPIRRYPDLIVHRLIRKYLIEKSMDGKAKHEWEEKLPQIAEH
TSQRERRAVDAERDTDELKKAEYMIQHIGDEFEGVISSVANFGMFIELPNTIEGMINVQN
MTDDYYHFDERQMALIGERKATVYRIGDVVKVKVVHVDVEERQIDFQIVGMPIDFGRQKD
KKARGKTIQAKTKGNQFEKKKTKKKKQKQRKGKNALRREKSGNTQHQPFYKGKSVKKKAR
KKKK
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaaagaagagattaaggcaattatccaaagcgctgattatgaacctatgtca
gtgtctgacttccaagatgcattaggattaaatagtgcagattcatttcgtgacctcata
aaaatattggttgagttagaacaatcaggaatggttacacggacaaaacaagaccgttat
caaaaacgcggacctaaaccaggcattgtcagaggaacattaagccaaaataagaaagga
tttgcgtttctaagacctgaagaagaggacatggaagatatctttataccgcctacaaaa
atcaatagagcaatggatggcgatacagttatcgtagaagtaaaaaaatctcgtggcgac
ttccgtaaaggaaaatttgaaggtgaagtgaaggcgatagaatcacattcgattaaacaa
gtggtcggtacattctcagaagcccgtcattttggtttcgtcgtccctgacgataaaaga
attatgcaagacatctttattcctaaagggcaggatttaggtgcgattgatggccataaa
gttcttgtacaaattacaaagtattctgatggaactaataatcctgaaggccaagtatca
gcgattttaggccataaaaatgatccaggcgtagatattttatccatcatttatcaacat
ggaatcgagatagaatttccagatgatgtgctgaaagaggcagaacgcattcctgaaaca
attcaaccgtcagaacttgaaggtcgacaagatttgcgtcaagatttaactattaccatt
gatggcgcagacgcgaaagatttagatgatgcgattgcagtcaaaaaattagatcatggc
aatactgaattaacagtaagtattgctgacgtgagttattacgtcaaagaaggttctgca
ctcgatcgagaagcttatgatcgttcgacaagtgtgtatttagtggaccgtgtgataccg
atgattccacaccgattaagtaacggaatttgttcgttaaatccaaatgttgatcgtttg
gcgatgagttgccgtatggtcattaatcccgaaggtaaagtcatcaaacacgaaatattt
gatagtgtgatccattctaatgcaagaatgacatatgaagctgtgaatcgtatcattact
gatagagatccagaaacacgccaaaaatatcgtgagcttgtaccaatgttagatttagct
aaaaaattatctcaaacattaatcgatatgcgtaaaaaacgtggcgaaatagattttgat
atcaaagaggctaaagttttagtcaatgaagaaggtattccaaaagaagtggttacacgt
gagcgtggtgaaggcgagcgattgattgaatcatttatgttaattgccaatgaaacgata
gcagaacattttagtaagatggaagttccatttatttaccgtgttcatgaacaaccaaaa
tcagagcgattacgccaattttttgactttattacgaattttggcatcatgattcaagga
acaggagaagatattcatccaagtactttacaaagtattagtgaagaaattgctggaaga
ccagaagatatggtcatatccacaatgatgcttcgctcaatgcaacaagcgcattatgac
gcagaaaatttaggccattttggtttagcagctgattattatacacactttacatcacct
atacgacgttatccagacttaatcgtacaccgattgattagaaaatatcttattgaaaag
tcgatggatggaaaagcgaaacacgaatgggaagaaaagttacctcaaattgctgagcat
acatcacaacgtgaacgccgtgcggtcgatgctgaacgtgatacggatgaacttaaaaaa
gcagagtacatgattcaacatattggtgatgaatttgaaggtgtcattagttcagtagca
aactttggtatgtttattgaactccctaacacaattgaagggatgatcaatgttcaaaat
atgactgatgactattatcattttgatgagcgacaaatggcgcttatcggtgaaagaaaa
gcgactgtctatcgaattggtgatgttgtaaaagtcaaagtagttcatgtagatgtggaa
gaacgacaaattgattttcaaattgtaggcatgcctattgattttggtcgacaaaaagat
aaaaaagcacgcggtaaaacgatacaagcaaaaacaaaaggcaatcagtttgaaaagaaa
aaaactaaaaagaaaaagcaaaagcagcgtaaaggaaaaaacgcactccgtcgtgaaaaa
tctggaaatacacagcatcaacctttttataaagggaaaagtgtgaagaaaaaagcacgt
aaaaagaaaaaataa
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