Staphylococcus pseudintermedius HKU10-03: SPSINT_0217
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Entry
SPSINT_0217 CDS
T01396
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ssd
Staphylococcus pseudintermedius HKU10-03
Pathway
ssd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SPSINT_0217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssd03021
]
SPSINT_0217
03400 DNA repair and recombination proteins [BR:
ssd03400
]
SPSINT_0217
Enzymes [BR:
ssd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SPSINT_0217
Transcription machinery [BR:
ssd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SPSINT_0217
DNA repair and recombination proteins [BR:
ssd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SPSINT_0217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ADV04746
LinkDB
All DBs
Position
250509..254129
Genome browser
AA seq
1206 aa
AA seq
DB search
MIDVNKFHYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
SCGKYKRVRYKGMICDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEEVIYFASYVVVDPGPTGLEKKTLLSEAEFRDYYDKFPGQFTAKMGAEGIKDLLE
EINLDEELKMLRDELESATGQRLTRAIKRLEVVESFRNSGNNPAWMILDVLPIIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPNLKMYQCGLPKE
MALELFKPFVMKELVQREIATNIKNAKSKIERTEDEVWDVLEDVIIEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKDAVNTGMMFNDTNEVIKAYANGHVHLHTRIGVQ
ASSFNNPTFTEEQNRKILTTSVGKVIFNEIIPDSFAYINEPTATNLEKSTPDKYFVDASE
LGEGGLAEYFENTELVPPFNKKFLGNIIAEVFNRFSITDTSMMLDLMKDLGFKYSSKAGI
TVGVADIVVLPDKQEILDESEKLVERVQKQFNRGLLTEEERYNAVIEIWTNAKDRIQAKL
MKSLDKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKIIELPITSSFREGLTVLEY
FISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIKEGTEMI
EPFIERIEGRYSKETVRHPETDEIIIRPDELITPEIAKEITDAGIEEMYIRSAFTCNTRH
GVCEKCYGKNLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRI
QEIFEARNPKGQAVITEIEGVIDNITVGKDRQQEIVVKGANETRSYLASGTSRLKVEIGQ
SVARGEVLTEGSIEPKNFLSIAGLTATEEYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLR
KVRIIEAGDTKLLPGSLVDIHNFTDANREAFKERKRPATAKPVLLGITKASLETESFLSA
ASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMKRYSKVDIEKDEVTQPGLE
NQVTVE
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtaaataaattccattacatgaaaataggactcgcttcacctgaaaaaatt
cgttcttggtcatatggtgaggtcaaaaagccagaaacaattaactaccgtacgttaaaa
ccagaaaaagatggtcttttctgtgaaagaattttcggaccaacaaaagactgggaatgt
agttgtgggaaatataaacgtgtacgctataaaggtatgatttgtgaccgttgtggtgtt
gaagttacaaaatcaaaagtacgtcgtgaacgtatgggacacattgagttagcagcacct
gtgtctcacatttggtacttcaaagggattccaagccgtatgggtctcttattagacatg
tcaccacgtgcattagaagaagtgatttactttgcttcatacgttgtggttgatccaggc
ccaacaggtttagagaagaaaacattactttcagaagcagaatttcgtgattactatgac
aaattccctggtcaatttactgccaaaatgggtgcagaagggattaaagacttattagaa
gaaatcaacttagatgaagagttgaaaatgcttcgtgatgagttagaatctgcgactggt
caacgtttaacacgtgccattaaacgtttagaagttgtggaatcattccgtaactctggc
aacaacccagcgtggatgattttagatgtactaccaattattccacctgaaatccgtcca
atggtacaacttgatggtggccgttttgcgacaagtgacttaaatgatttatatcgtcgt
gtcatcaaccgtaacaaccgtttaaaacgtttattagatttgggtgcgcctggcatcatt
gtacaaaacgaaaaacgtatgttacaagaagctgttgacgcattaatcgataacggtcgt
cgtggtcgtccggtaacaggtccgggtaaccgtccgcttaaatcactttcacacatgttg
aaaggtaaacaaggtcgtttccgtcaaaacttacttggtaaacgtgtagactattctggt
cgttcagttatcgcggtaggaccaaacttgaaaatgtatcaatgtggtctaccaaaagaa
atggcattagaattgttcaagccgtttgtcatgaaagaacttgtacaacgtgaaattgcg
acaaacatcaaaaacgcgaaaagtaaaattgagcgtacagaagatgaagtttgggatgta
ttagaagatgtgattatcgaacacccagtattacttaaccgtgcaccaacattacacaga
ttgggtatccaagcgttcgagccgactttagttgaaggccgtgcgatccgattacaccca
cttgtaactacagcttataacgccgactttgatggtgaccaaatggcggtacacgtacct
ttatcaaaagaagcacaagctgaagcacgtatgttaatgcttgccgctcaaaacatcttg
aaccctaaagatggtaaaccagttgtgacaccgtctcaggacatggttttaggtaactat
tacttaacattagagcgtaaagatgcagtcaatacgggtatgatgtttaatgatacaaat
gaagtgattaaagcttatgcgaatggacacgtccacttgcatacgcgtatcggtgttcaa
gcgtcatcattcaacaacccaacatttaccgaagagcaaaatcgcaaaatcttaacaact
tctgtaggtaaagtgatcttcaacgaaattattccagattcatttgcatacattaacgaa
ccaacagcgacgaacttagaaaagagtacgcctgataaatatttcgttgatgcgtctgaa
cttggagaaggtggtttagctgagtacttcgaaaacactgaactcgtgccaccattcaac
aaaaaattcttaggaaacattatcgcagaagtgttcaatcgcttcagcattacagatacg
tctatgatgcttgacttaatgaaagacttaggtttcaaatactcttcaaaagcaggtatt
acagttggtgtagctgacatcgtggtattacctgataaacaagagattttagatgagtct
gagaaattagtagaacgcgtccaaaaacaatttaaccgtggtttattaacagaagaagaa
cgttacaatgcggttattgaaatttggacaaatgcgaaagatagaatccaagcgaaactg
atgaagtctcttgataagacgaacccaatcttcatgatgagtgactctggtgcccgtggt
aacgcctctaactttacgcaacttgctggtatgcgtggtttaatggccgcgccatcaggt
aaaattatcgaacttccaatcacatcatcattccgtgaaggtttaacggtattagagtac
tttatctctactcacggtgcgcgtaaaggtcttgccgatacagcacttaagactgccgac
tcaggttacttaacacgtcgtctcgttgacgttgctcaagacgttatcgtacgtgaagaa
gactgtggtacggatcgtggtttactcgtttcagatatcaaagaaggtacagaaatgatc
gaaccatttatcgaacgtattgaaggtcgttattctaaagaaacagtacgtcatccagag
acagacgaaatcatcattcgtccggatgaattgattacacctgaaattgcgaaagagatt
acggatgcaggtattgaagaaatgtacatccgctctgcatttacatgtaacacacgtcac
ggtgtatgtgaaaaatgttacggtaaaaacttagcaactggtgaaaaagtagaagtcggt
gaagcagtcggaactatcgctgcacaatcaatcggtgaaccaggtacacagttaacaatg
cgtacgttccatacaggtggggtagccggaagcgatatcacgcaaggtttacctcgtatc
caagagattttcgaagcacgtaaccctaaaggtcaagcagtgattactgaaattgaaggt
gtcattgataacatcacagtaggtaaagacagacaacaagaaatcgttgttaaaggtgct
aacgaaacacgttcttaccttgcatcaggaacatcacgtctgaaagtcgaaatcggtcaa
tcagttgcacgtggtgaagtcttaacggaaggttcaattgagccgaaaaacttcctgtct
atcgctggtttaacagcaacagaagagtacttacttaaagaggtacaaaaagtttaccgt
atgcaaggtgtagaaatcgacgacaaacacgttgaagttatggtacgtcaaatgttacgt
aaagtgcgtatcattgaagctggtgacacgaaattattaccaggttcacttgttgacatc
cacaacttcacagatgcaaaccgtgaagcgtttaaagagcgtaaacgaccagcaactgcc
aaaccagtattgcttggtatcacaaaagcgtctcttgaaacagaaagcttcttatctgca
gcatcattccaagaaacaacacgtgtcttaactgacgcagcgattaaaggtaaacgtgat
gatcttctcggtcttaaagagaacgttattatcggtaagttaatccctgcaggtacaggt
atgaaacgttacagtaaagttgatattgaaaaggatgaagtgacacagccaggtcttgaa
aatcaagtaactgtggaataa
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integrated database retrieval system
