Staphylococcus pseudintermedius HKU10-03: SPSINT_0433
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Entry
SPSINT_0433 CDS
T01396
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ssd
Staphylococcus pseudintermedius HKU10-03
Pathway
ssd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPSINT_0433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssd03019
]
SPSINT_0433
03400 DNA repair and recombination proteins [BR:
ssd03400
]
SPSINT_0433
Enzymes [BR:
ssd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SPSINT_0433
Messenger RNA biogenesis [BR:
ssd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPSINT_0433
DNA repair and recombination proteins [BR:
ssd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SPSINT_0433
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RQC
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
ADV04962
LinkDB
All DBs
Position
473122..474903
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AA seq
593 aa
AA seq
DB search
MEQTLSHYFGYKSFRPGQKEIIERVLNHHHTLGVLPTGGGKSLCYQVPGLMFKGTTIVIS
PLISLMKDQVDQLTAMGISAAYLNSSLSTQAQKEIETQLVNGELKFLYIAPERFEQTYFE
MLLRRVDISLVAFDEAHCISKWGHDFRPSYQAVIQRVLTMPQQFSIVALTATATTEVQQD
IMERLMISRQHLVKTSIRRRNLKFQVNGTYQRQKFVLDYIQKHSQKAGIVYCSTRKQVEA
LYEALEDADIPVSYYHAGMTAKQRDEAQNDFLYDRTRVVVATNAFGMGIDKSNVRYVIHY
NMPGDLESYYQEAGRAGRDGLDSDCILLYSDRDIALHQYFIGASKADDDYKERMGEKLTK
MIQYTKTTKCLEATLVHYFEPNEKLEECHQCSNCIDKNKTYNMTKEAKMIISGVARLRQQ
EGYQTVIQVLRGEVSDYIRHQGYENLSTYGLMKDYTTGELHHLIDELRFKGFLNEHDEIL
MCDASVEKLLSEDTQVFTRPFKRKSKETVHINTVEGVDRTLFEKLVEVRREMSERLNMPP
TNIFTDYTLEAFAKRKPVTKQEMIQIDGVGSYKLKHYCPEFLEAIQEYKMHRS
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaacattgtcgcattattttggatacaaatcttttcgtcctggtcaaaaagaa
attattgaacgcgtattgaatcatcatcatacgttaggggtgttacccacaggtgggggt
aaatcgttatgttatcaagtaccgggattgatgtttaaaggaacgaccattgtcattagt
cctttaatttcgttaatgaaagaccaagtggaccaattgaccgcaatgggaatatctgcg
gcttatttgaatagtagtttaagtacgcaagcacaaaaagagatagaaacgcaattggtc
aatggtgagttgaaatttttatacatcgcaccggaacgttttgagcaaacttattttgaa
atgttgttgcgacgtgtcgatatttcactcgtcgcatttgacgaagcacactgtatttca
aaatggggacatgattttcggccgagttatcaagcagtcatacaacgcgtattgaccatg
ccgcaacagttttcgattgtcgcattgactgcaacagcgacgactgaagtgcaacaagat
attatggaacggttaatgatttcgcgacaacacttagtcaaaactagtattcgtcgacgt
aatttgaagttccaggtgaatgggacgtatcaacgtcaaaagtttgtattggattatatt
caaaaacatagtcagaaagcggggattgtttattgttcaacgcgtaaacaagtagaagcc
ttgtatgaagctttagaagacgcagatatccctgtatcctactatcatgcaggaatgaca
gcgaaacaaagagatgaagcccagaatgactttttatatgaccgtactcgtgtagtcgtt
gcgaccaacgcattcggtatgggaattgataaatcgaatgtccgttatgtcattcattac
aatatgccgggtgatttggaatcgtattatcaagaagcaggacgtgcaggtcgagacgga
ttagatagtgattgtattttattgtacagtgatcgagatattgctttacatcagtatttt
atcggtgcctcgaaagcggacgatgattacaaggaacgtatgggcgaaaaattgacgaaa
atgattcaatatacgaaaacgacgaaatgtctagaagcaacattagtccattattttgag
ccgaatgaaaaacttgaagaatgtcaccaatgtagtaattgtattgataaaaataaaacg
tacaatatgacgaaagaagcgaaaatgatcattagcggtgtcgcacgtttacgtcaacaa
gaaggatatcaaacggtcattcaagttttgcgtggcgaggtttcggactacattcgtcat
caaggctatgaaaatctttcgacgtatggtttgatgaaagattatacgactggcgagtta
catcatttaatcgatgaactccgctttaaaggctttctcaacgaacatgacgaaatactc
atgtgtgatgcctcagtagaaaagttattgagtgaggatacgcaagtgtttacaaggccg
ttcaagcgtaagtcgaaagaaacagtgcatattaacactgtagaaggggtcgaccgcacg
ttatttgaaaagcttgtcgaagtcagacgtgaaatgagcgaacgattaaacatgccaccg
acgaatatttttacagactatacgttagaagcttttgcgaaaagaaagcctgtcacaaag
caagaaatgattcagattgatggtgttggtagttataagctgaagcactattgtcctgaa
tttttagaagcgattcaagaatataaaatgcatcgttcgtaa
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