Staphylococcus pseudintermedius HKU10-03: SPSINT_0495
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Entry
SPSINT_0495 CDS
T01396
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ssd
Staphylococcus pseudintermedius HKU10-03
Pathway
ssd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPSINT_0495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssd03019
]
SPSINT_0495
03016 Transfer RNA biogenesis [BR:
ssd03016
]
SPSINT_0495
Enzymes [BR:
ssd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SPSINT_0495
Messenger RNA biogenesis [BR:
ssd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SPSINT_0495
Transfer RNA biogenesis [BR:
ssd03016
]
Prokaryotic type
tRNA degradation factors
SPSINT_0495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
S1CSD-TOTE-2
OB_HELZ2
Rho_RNA_bind
RNase_II_C_S1
OB_Dis3
S1_RRP5
FRD2
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
ADV05024
LinkDB
All DBs
Position
542254..544611
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AA seq
785 aa
AA seq
DB search
MNLKEEIIAIIKSADYEPMSVSDFQDALGLSSADSFRDLIKILVELEQTGMVTRTKQDRY
QKQQQKTNSGLVRGTLSQNKKGFAFLRPDDQEMEDIFIPPTKINRAMDGDVVLVEVKKSR
GDFRKGKFEGEVKAIESHSIKQVVGTFSEARHFGFVVPDDKRIMQDIFVPKGQELGAVEG
HKVLVQITQYSDGTNSPEGQISAILGHKNDPGVDILSIIYQHGIEIEFPDDVLKEAENVP
ETIQSDELKGRRDLRDELTITIDGADAKDLDDAIAVKKLDNGNTELTVSIADVSYYVTEG
SALDREAYDRATSVYLVDRVIPMIPHRLSNGICSLNPEVDRLAMSCRMEIDAQGQVVKHE
IFESVIHSNARMTYDAVNRIITDKDAATRVQYPEIVPMLDLAQTLSQQLIAMRKKRGEID
FDIKEAKVIVNEEGIPKEVVTRERGEGERLIESFMLIANETVAEHFNQMEVPFIYRIHEQ
PKSERLRQFFDFITNFGIMVKGTGEDIHPSTLQNIHEEIAGRPEDMVISTMMLRSMQQAR
YDADNLGHFGLAADYYTHFTSPIRRYPDLIVHRLVRKYLIEKSMDGRAMHEWEEKLPQIA
EHTSNRERRAIDAERDTDELKKAEFMIQHIGDEFEGVISSVANFGMFVELPNTIEGMVNM
QNMSDDYYRFDERQMALIGERKAKVYRIGDVVKVKVIHVDVDERQIDFQIVGMPIDVSSK
RERDPRGKTIQAKTKGTQFEKTDKKKKRKSRKGKNARQRDKSGNTQHKPFYKGKKVKKKA
RKKKK
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaaagaagagattatcgcaatcattaaaagtgcagattatgaacccatgtct
gtatctgacttccaagatgcattaggattgagtagtgcggattcatttcgtgaccttata
aagattttggtagagttagaacaaacaggaatggtgacgcgtacgaaacaagaccgttat
caaaaacaacaacagaagacaaattcaggtttagtgagaggaacattaagccaaaataaa
aagggatttgcctttttacgtccagatgatcaagaaatggaagacatctttattccgccg
acaaaaatcaaccgtgcaatggatggagacgtcgtattagtcgaagtgaagaagtcgcgc
ggtgattttcgcaaaggcaagttcgaaggtgaagtgaaggcgattgaatcccattcgatt
aaacaagttgtcggtacattttctgaagcgcgtcatttcggtttcgttgtacctgatgat
aaacgcattatgcaagatattttcgtgccaaaaggtcaagaacttggtgcagtagaaggc
cataaagtgttagtgcaaattacccaatactcagatggtacgaacagtccagaggggcag
atttcagcgattttaggccataaaaatgatccgggtgttgatattttatcgatcatttac
caacatggcattgaaattgagtttcctgatgatgtattgaaagaagcggaaaacgtacct
gaaacaatacaatccgatgaacttaaaggccgtcgtgatttaagagatgaactgacgatt
acaatcgatggtgcagatgcgaaagatttagatgacgctattgctgtgaaaaagttggac
aatggcaacacggaattgacagtcagtattgcggacgtgagctattatgtcacagaaggt
tcagcgttagaccgagaagcgtatgatcgtgcgacaagtgtctatttagtcgaccgtgtc
attccgatgattccgcaccgattgagtaatgggatttgttcgttaaatcctgaggtcgac
cgtttagccatgagttgtcgaatggaaattgatgcacaaggtcaagtggtcaaacacgag
atttttgaaagtgtgattcattctaacgcacgtatgacttatgacgcggtaaatcggatc
attacagataaagatgcagcgacaagagtacaatatccagaaatcgtgcctatgttagat
ttagcccagacgttatcacaacaattgattgcgatgcgtaaaaaacgtggcgaaatcgac
tttgatattaaagaagcgaaagttatcgtaaacgaggaagggattccgaaagaagtcgtg
acacgtgagcgcggtgaaggtgaacgtttaatcgaatcatttatgttgattgcaaacgaa
acagtggcagaacatttcaatcaaatggaagtgccattcatttaccgtattcacgaacag
ccgaagtcagaacgtctccgtcagttttttgattttattacgaactttggcattatggtc
aaaggaacaggcgaagatattcatccaagtacgttgcaaaacattcacgaagagattgct
ggacgacctgaagatatggtcatttcaaccatgatgttacgttcaatgcaacaagcacgt
tatgatgctgataacttaggccatttcggtttagcggcagattattatacgcattttacg
tcaccaattcgtcgctatccagacttgattgttcatcgtttagtgcgtaaatatttaatc
gaaaagtcgatggatggtcgtgcaatgcatgaatgggaagaaaagctcccacaaattgct
gagcatacatcaaatcgtgaacgtcgtgccattgacgcagaacgtgatacggatgaactg
aaaaaagcggagtttatgattcaacatattggtgatgaatttgaaggtgtcatcagttct
gtcgcgaattttggtatgtttgtagagttgcccaacacgattgaaggtatggtcaacatg
caaaatatgtctgatgactattaccgttttgatgagcgccaaatggcattgattggtgaa
cgaaaagcgaaagtttaccgcattggtgatgtcgtaaaggttaaagtcattcatgttgat
gtggatgaacgtcaaatcgatttccaaattgtaggcatgccaattgatgtaagctcgaaa
cgtgaaagagacccacgtggtaaaacgattcaagcgaaaacaaaaggcactcaatttgag
aaaactgataaaaagaaaaagcgtaaatcacgtaaaggtaaaaatgcgagacaacgtgac
aaatcaggtaatacacaacacaagccgttttataaaggtaaaaaagtaaagaaaaaggca
cgaaaaaagaaaaaataa
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