Staphylococcus pseudintermedius HKU10-03: SPSINT_0796
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Entry
SPSINT_0796 CDS
T01396
Name
(GenBank) Zn-dependent hydrolase, RNA-metabolising, CPSF 73 kDa analog
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ssd
Staphylococcus pseudintermedius HKU10-03
Pathway
ssd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPSINT_0796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssd03019
]
SPSINT_0796
Messenger RNA biogenesis [BR:
ssd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SPSINT_0796
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ADV05324
LinkDB
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Position
complement(839109..840788)
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AA seq
559 aa
AA seq
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MKQLQKNEVGVYALGGLGEIGKNTYAIEYKDEIVIIDAGIKFPDDNLLGIDYVIPDYTYL
EQNQDRIVGLIITHGHEDHIGGVPYLLKKINVPIYSGPLALGLIRNKLEEHHLLRQAELI
EIDEDTVIDSKHFKVSFYLTTHSIPETYGVIVDTPEGKIVHTGDFKFDFTPVGAPANIGK
MAQLGDEGVLCLLSDSTNSLVPDFTLSEREVGQNVDKIFRNCTGRIIFATFASNIYRVQQ
AVEAAVKYNRKIVTFGRSMENNIKIGTELGYIKAPPETFVEPNKINSIPKHELLILCTGS
QGEPMAALSRIANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINALYQAGAEVIHSKI
SNIHTSGHGSQGDQQLMLRLIRPKYFLPIHGEYRMLVAHGQTGVDCGVPEENVFIHDIGD
VLALTRDSARTAGRIPSGNVLVDGSGIGDIGNVVIRDRKLLSEEGLVIVVVSIDFNKNQL
LSGPDIISRGFVYMRESGQLIYDAQKKIKQDVIYKLNNNENIQWHQVKSSIIETLQPYLF
EKTARKPMILPVIMKVNEK
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaacttcaaaaaaatgaagttggcgtatacgcattaggtggtttaggtgaaatt
ggtaaaaacacttacgccatcgagtataaagatgaaattgtaatcattgacgcaggaatc
aaattccccgatgataatttactcggtatcgactatgtcatacctgactacacgtatctt
gaacaaaaccaagatagaattgtaggcttaattatcacacatggtcacgaggatcatatc
ggtggtgtgccctacctgctcaaaaagattaatgtaccaatttacagcggtccactcgca
ctcggtttaattcgtaataaattagaagaacatcatttattacgtcaagctgaattgatt
gaaattgatgaagatactgtcattgattcaaaacattttaaagtgagtttttatttgaca
acacatagtattcctgaaacatacggtgttattgtcgatacgcctgaaggtaaaatcgtg
cataccggtgactttaagtttgacttcacacccgtcggcgcaccagccaatattggtaaa
atggcgcaactcggtgatgaaggtgtactctgtttactttctgactctaccaattcactc
gtaccagactttacactaagtgaacgtgaagtcggtcaaaacgtagataaaattttccgt
aattgtacaggacgtattatttttgcgactttcgcgtcaaacatttatcgtgtgcaacaa
gccgtcgaagccgcagttaaatacaaccgtaaaatcgtgacgtttggacgttcgatggaa
aataatatcaaaatcggaacagagttagggtatattaaagcaccccctgaaacatttgtt
gagccaaacaaaattaatagcattccaaagcatgaattattaattttatgtacaggctcg
caaggtgaaccgatggcggcgttatcacgtatcgcaaatggtacacataagcagattaaa
atcattcctgaagacacggttgtattcagttcgtcacctattccaggtaatacgaaaagc
attaaccgtacgatcaatgccttgtatcaagccggcgctgaagtcattcatagtaagatt
tcaaacatccatacgtctggtcacggctctcaaggtgatcaacagttgatgttacgctta
attagaccgaaatatttcttaccaatccacggtgaatatcgtatgctcgttgcacacggt
caaacaggtgtggactgtggagtaccagaagaaaatgtcttcatccatgatatcggtgac
gttcttgcgttgacacgagacagtgcacgtacagcaggccgtatcccatcaggtaatgta
ttagtcgatggtagtggtattggtgatattgggaatgttgtcattcgcgaccgtaagtta
ttgtctgaagaaggattagtcattgtcgtggttagcattgacttcaacaaaaaccaactg
ttatcaggtccagacattatctcacgtggctttgtctacatgcgagaatctggtcaattg
atttacgacgcccaaaagaaaattaagcaagatgtcatctataaattgaataacaacgaa
aacattcagtggcatcaagtgaaatcatctattatcgaaacattacaaccgtacttattt
gagaaaacagcacgtaaaccaatgattttaccagtcattatgaaagtgaatgaaaaatag
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