Staphylococcus pseudintermedius HKU10-03: SPSINT_0992
Help
Entry
SPSINT_0992 CDS
T01396
Name
(GenBank) DNA polymerase III alpha subunit
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
ssd
Staphylococcus pseudintermedius HKU10-03
Pathway
ssd03030
DNA replication
ssd03430
Mismatch repair
ssd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SPSINT_0992
03430 Mismatch repair
SPSINT_0992
03440 Homologous recombination
SPSINT_0992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssd03032
]
SPSINT_0992
03400 DNA repair and recombination proteins [BR:
ssd03400
]
SPSINT_0992
Enzymes [BR:
ssd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SPSINT_0992
DNA replication proteins [BR:
ssd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SPSINT_0992
DNA repair and recombination proteins [BR:
ssd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SPSINT_0992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NI
DNA_pol3_a_NII
HHH_6
HHH_3
tRNA_anti-codon
RNase_H_2
T2SSK
Motif
Other DBs
NCBI-ProteinID:
ADV05520
LinkDB
All DBs
Position
1046109..1050416
Genome browser
AA seq
1435 aa
AA seq
DB search
MTLQNQEKFKILLKQVNMLDHFDQDFIDQGQLTRVDVSPKSRKWTFHIRLPRLLKYEDYA
VFTHAMKESFQHIADVDWKITVNDVSQQDEYLLKYLGDCIEQTQLSPKVKGQLKQKRMIV
SGDVVKILVQNDIEGNHFNKVCNGSLVRAMQRCGFNIQKVVFETDESGHDEDLASLEAHI
QEEDELSAREATAKIEKMKEQRAQQDDEVAVERCQIGKPIQVENVRPIESIIEEEFKVAI
EGVIFDINLKELKSGRHIVELKVTDYTDSLVLKMFTRKNKNDLDHFKSLKEGQWLRAQGR
IEEDMFIRDLVMMMSDIEAIKRTPKMDKAAEKRVEFHLHTSMSQMDGVTHIGDYVAQAAQ
WGHDAIAVTDHNVVQAYPDAHAAAEKHGIKMIYGMEGMLVDDGVPIAYKPSNIMLQDATY
VVFDVETTGLSNQYDKIIELAAVKVKNGEIIDKFERFSNPHEKLTETIKNLTHITDDMLK
DAPEIEEVLTEFKAWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTNAVIDTLELSRTIN
TSYGKHGLNFLAKKYGVELTQHHRAIYDTEATAYIFVKMLAQLKALDVHNHQDINKKLSN
EDAYKRARPQHVTLIVQNQTGLKNLFKIVSASLVQYYYRTPRIPRSLLDEHREGLLIGTA
CDEGEVFTAVMQRDQSEVERIAKYYDYIEVQPPALYQDLLDRDLIRDNETLVEIYERILK
VGETNQIPVIATGNAHYLHEHDAIARRILIAAQPGNPLNRSTLPEAHFRTTDEMLDAFHF
LGEERAHQIVVENTRALAERIEKVVPIKDKLYTPNMEGANEEIREMSYRHAKQLYGEELP
QIVIDRLEKELESIIGNGFAVIYLISQRLVKKSLEDGYLVGSRGSVGSSFVATMTEITEV
NPLPPHYICPSCKKSEFFDDGSVGSGFDLPDKTCECGTEMIKEGQDIPFETFLGFKGDKV
PDIDLNFSGEYQPKAHNYTKVLFGEEYVYRAGTIGTVAEKTAFGFVKGYLNDQGIHKRGA
EVDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIFDFTPIQYPADDQSSSWMTTHFDFHSIH
DNVLKLDILGHDDPTMIRMLQDLSGIDPKTIPVDDQQTMRIFSSPEALGVTEEEILAKTG
TFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHGTDVWLGNAQELIRSGTCTLSSCIG
CRDDIMVYLMYAGLEPSLAFKIMEAVRKGKGLTEEFEQVMKENNVPDWYMDSCKKIKYMF
PKAHAAAYVLMAVRIAYFKVHHPLYYYASYFTVRASDFDLITMVKDKDSIRQTVKDMYAR
YMDLGKKEKDVLTVLEIMNEMAHRGYRMQPVNLEKSQAYEFIIEGDTLIPPFVAVPGLGE
NVAKRIVEAREEGPFLSKEDLNKKAGVSQKIIEYLDSLGSLPNMPDKAQLSIFDM
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
ttgacattacagaatcaagaaaaatttaagattcttcttaaacaagtgaatatgttagac
cattttgatcaagacttcattgatcaaggccaattgacacgtgtagatgtatccccaaaa
tcacgaaaatggacgtttcatattcggttgccacgattgttaaaatatgaagattatgca
gtctttacccatgcgatgaaagaaagcttccaacatattgcagatgtagattggaaaatt
acggtcaatgatgtgtcacaacaagatgaatatttactgaaatatttaggtgattgtata
gaacaaacacaattgtcgcctaaagtgaaagggcaactaaaacaaaaacgtatgattgtc
tcaggtgatgttgttaaaattctcgtccaaaatgatattgaggggaaccatttcaataaa
gtttgcaacggcagcttagtgcgcgcgatgcaacgatgtggttttaatattcaaaaagtt
gtatttgaaacagatgaaagtggtcacgacgaagatttagcatcattagaagctcatatt
caagaggaagatgaactaagtgcacgcgaagcaactgctaaaattgaaaaaatgaaagaa
caacgtgcacaacaagatgatgaagtggccgtcgaacgttgtcaaattggtaagccgatt
caagttgaaaatgttcgaccgattgaatcgattattgaagaagagtttaaggtggcaatt
gaaggtgtcatttttgacattaatttaaaagagttgaaaagtggccgtcacatcgttgaa
ttaaaggtgacagactatacggattcactcgtacttaaaatgtttacacgtaaaaacaaa
aacgacttagaccatttcaaatcattaaaagaaggtcaatggctgcgtgcacaaggtcgt
attgaagaagatatgttcattcgcgacctcgtgatgatgatgtctgacattgaagcgatt
aaacgcacaccaaaaatggataaagctgctgaaaagcgtgtagaattccatttgcataca
tcaatgagtcaaatggatggtgtgacgcatattggtgattatgtcgcacaagctgcacaa
tggggacatgatgcgattgcagtgacggatcataacgtcgtacaagcttatcctgatgca
catgctgcagctgaaaagcatggtattaaaatgatttatggaatggaaggcatgctcgtt
gatgatggtgtgccgattgcgtacaaaccgtctaatattatgctccaagatgcgacatat
gttgtatttgacgtcgagactaccggattatccaatcagtacgataaaatcatcgagttg
gccgccgtgaaagtgaaaaatggtgaaattattgataagttcgaacgatttagtaatccg
catgaaaagttaactgaaacgattaaaaacttgacgcatattacagatgatatgttaaaa
gatgcgcctgaaattgaagaagtgcttactgaatttaaagcatgggtaggcgatgcgatt
ttcgttgcacataatgcatcgttcgatatgggctttatcgataccggttatgaacgtctc
gggtttggtccttcgacaaatgcggttattgatacacttgagttgtcacgtacgattaac
acaagttatggcaaacacggcttgaactttttagctaaaaaatatggcgtggagctcaca
caacatcaccgtgcgatttatgatacggaagcaacagcttatattttcgtgaagatgttg
gcgcaattaaaagcgttagatgtgcacaaccaccaagatatcaacaaaaaattatcgaat
gaagatgcttataaacgtgcacgcccgcaacacgtcacattaattgtgcaaaatcaaacc
ggtcttaaaaacttgtttaaaattgtcagtgcgtctctcgtgcaatattattaccgtaca
ccacgtattccacggtcattactagatgaacatcgtgaaggcttgttaatcggtaccgca
tgcgatgaaggtgaagtatttactgccgtcatgcagcgagatcaatctgaagttgaacgg
attgcgaaatattatgattatattgaagtgcaaccgcctgctttgtaccaagatttacta
gatcgtgacttgattcgtgataatgaaacgcttgtcgaaatttatgaacgtattttaaaa
gtgggagaaacgaatcaaattccagttattgcgacaggcaatgcccactatttacatgaa
catgatgcgattgcacgtcgtattttaattgccgctcaacctggtaacccgttgaaccgt
tcgacgttaccagaagcacattttagaacgacggatgaaatgttagatgcttttcatttc
ttaggtgaagaacgtgcgcaccaaatcgtcgttgaaaatacgcgtgcgttggcagagcgc
attgaaaaggtcgttccaattaaagataaactgtatacgcccaatatggaaggcgcaaat
gaagaaattcgtgaaatgagttatcgtcatgcgaaacagttgtacggtgaagaattacca
cagattgtgattgaccgtctagagaaagagctagaaagtattatcggtaacggatttgcg
gttatttatttaatttcgcaaagactcgttaaaaagtcattagaagatggctatttagta
ggttctcgtggttcggtcgggtcaagctttgttgcgacaatgacggaaattacagaagtg
aacccactgccaccgcattacatttgtccaagttgtaaaaagagtgagtttttcgatgat
ggttcagtcggttcaggctttgacttacctgataaaacgtgtgaatgtggcacagagatg
atcaaagaaggacaagatattccgttcgaaacgttcttaggctttaaaggggataaagtc
cccgatatcgacctgaactttagtggtgaatatcaaccgaaagcacataactatacaaaa
gtcttgttcggtgaagaatatgtttatcgtgccggaacaattggtactgtcgctgaaaaa
acggcatttggtttcgtgaaagggtatttaaatgatcaaggcattcataaacgtggtgct
gaagtggatcgtctcgtgaaaggttgcacaggtgttaaacgtacaactggtcagcaccca
ggtgggattatcgtcgttccagattatatggacatttttgactttacaccgattcaatat
ccagcagacgatcaaagttcaagttggatgacgacgcactttgacttccattcgattcat
gataacgttctgaaacttgatattctcgggcacgatgatccaacgatgattcggatgttg
caagacttgtcaggtatcgatccaaaaacgattcctgttgacgatcaacaaacgatgcgg
attttcagttctccagaagcgcttggtgtaacagaagaggaaattttagcgaaaaccgga
acgttcggtgtgccagaatttgggacaggtttcgtacgtcaaatgttagaagacacgaaa
ccgacgacattttcagagcttgtacaaatttcaggactgtcacatggtaccgatgtatgg
ttgggtaatgcacaagaactgattcgtagtggaacttgtacgttatcgagctgtatcggt
tgtcgtgacgatattatggtgtacttaatgtacgctggtttagaaccgtcactcgccttt
aaaattatggaagcagtacgtaaaggtaaaggcttaacagaggaatttgaacaagtgatg
aaagaaaataacgtgccagattggtatatggattcatgtaagaaaattaaatacatgttc
ccgaaagcgcacgcagcagcttatgtgctaatggctgtacgtatcgcttatttcaaagtg
catcatccactttattattatgcaagttactttactgtccgtgcgtcagactttgattta
attacgatggtgaaagacaaagacagtattcgtcaaactgtaaaagatatgtatgcacgt
tacatggatttaggtaaaaaagaaaaagatgtattgaccgtgctagaaattatgaatgaa
atggcgcatcgtggttaccggatgcaacctgtcaacttagagaaaagtcaggcatatgag
ttcattattgaaggtgatacattaattccgccattcgttgctgtgccgggtcttggtgaa
aacgtagcgaaacgtattgttgaagcgcgtgaagaaggaccgttcttatcgaaagaagat
ttgaacaaaaaagctggtgtgtcacaaaaaatcattgaatacctcgatagtttaggctca
ttaccgaatatgcctgacaaagcacagttgtctatctttgatatgtag
DBGET
integrated database retrieval system
