Staphylococcus pseudintermedius HKU10-03: SPSINT_1003
Help
Entry
SPSINT_1003 CDS
T01396
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ssd
Staphylococcus pseudintermedius HKU10-03
Pathway
ssd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPSINT_1003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssd03019
]
SPSINT_1003
03016 Transfer RNA biogenesis [BR:
ssd03016
]
SPSINT_1003
Enzymes [BR:
ssd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SPSINT_1003
Messenger RNA biogenesis [BR:
ssd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SPSINT_1003
Transfer RNA biogenesis [BR:
ssd03016
]
Prokaryotic type
tRNA degradation factors
SPSINT_1003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
S1_2
S1_RRP5
KH-I_KHDC4-BBP
S_layer_N
SPATA25
GMT-wHTH
DUF5805
Motif
Other DBs
NCBI-ProteinID:
ADV05531
LinkDB
All DBs
Position
1059023..1061116
Genome browser
AA seq
697 aa
AA seq
DB search
MSQEKKVFKTEWANQPLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLT
VNYEEKMYAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPDGYRHDVQIINTVLSA
DPNCSPEMAAMIGSSMALSVSDIPFQGPIAGVNVGYVDGEYVINPNLEQREKSRLDLEVA
GHKDAVNMVEAGASEITEAEMLEAILFGHEEIKRLCAFQEEIIAHLQPEKREFIPEEKNQ
TLIDSVTQMTKDENLNGAIQTFDKQERDANLDAIKERILANFENEEDPENEALLKEVGTI
INTLIKDEVRRLIADEKIRPDGRKPDEIRPLSSEVGLLPRAHGSGLFTRGQTQALSVLTL
GSISEYQIIDGLGEEEHKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIP
DEKTFPYTVRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREESYT
ILTDIQGMEDALGDMDFKVAGTTEGITAIQMDIKIDGLTKEVIEEALEQARKGRLAILEH
MMQTIDQPRKELSAYAPKVEIMQIKPEKIRDVIGPGGKQINEIIDATGVKLDIEQDGTVF
IGSTEQDMINQARAWIESIVREAEVGQVYDAKVKRIEKFGAFVELFPGKDALVHISQISN
ERINKVEDVLNMGDTLKVKVTEIDKQGRVNASHKVLL
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaagaaaagaaggtttttaagacggaatgggcaaaccagccgttaacaatagaa
acaggacaactcgcaaaacaagcgaatggtgctgtactcgtacgctacggggacacagtt
gttttgtctacagcgacagcatcaaaagaaccacgcgatggcgactttttcccattaact
gtcaattatgaggaaaaaatgtatgccgcgggtaaaattccaggtggcttcaaaaagcgt
gaaggacgtccaggtgacgaagcgacattgactgcacgtttaatcgaccgtcctatccgt
ccattattcccagatggctatcgtcatgatgtccaaatcattaatactgtattgagtgcg
gatcctaactgttcacctgaaatggcagcgatgatcggatcgtcaatggcgttaagtgta
tcagatattccattccaaggcccaattgcgggtgtgaatgtaggctatgttgatggcgaa
tatgtcattaacccgaatttagaacaacgcgaaaagtcacgtcttgatctagaagtagcc
ggtcataaagacgcggtgaacatggttgaagcgggtgcgagtgaaattactgaagcagaa
atgttagaagcaattttatttggccatgaagaaatcaaacgtttatgtgcattccaagaa
gaaattattgcgcatttacaacctgaaaaacgtgaatttattcctgaagagaaaaatcaa
acgctcatcgattcagtgacgcaaatgacaaaagatgagaatttaaatggtgcgattcaa
acgttcgacaaacaagagcgtgacgcgaatcttgatgcaattaaagaacgtattttagcg
aactttgaaaacgaagaagatcctgaaaatgaagcattattaaaagaagttggcacaatt
attaatactttaattaaagatgaagtacgccgtttaattgcagatgaaaaaattcgtcca
gacggtcgtaaacctgacgaaatccgtccattatcatcagaagtgggcttattaccacgt
gcacatggttcagggttatttacacgtggacaaacacaagcattgtcagtgttaacgtta
ggctctatttctgaatatcaaattatcgatggtttaggtgaagaagagcacaaacgtttt
atgcaccactacaacttcccgaacttctcggtaggtgagacaggtccagtacgtgcacca
gggcgtcgtgaaattggtcatggtgcgttaggtgaacgtgcattaagatatattattcca
gatgagaagacgttcccttatacagtgcgtatcgtaagtgaagtgttagagtctaacggt
tcttcatcacaagcgtctatctgtggttcaactttagcgttaatggacgcgggtgtgccg
attaaagcaccagttgcagggattgcgatgggtcttgttacgcgcgaagaaagctacacg
attttaacggatattcaaggtatggaagacgcactgggtgatatggacttcaaagttgca
ggtacgactgaagggattactgcgattcaaatggacattaaaatcgacggcttaacgaaa
gaggtcattgaagaagcgttagaacaagcgcgtaaaggtcgtttagccattttagagcat
atgatgcaaacgattgaccaaccaagaaaagaattaagtgcttatgcgcctaaagtagaa
atcatgcaaattaaacctgaaaaaatccgtgatgtcatcggaccaggtggtaaacaaatc
aacgaaattattgatgcgacgggtgttaaacttgatatcgaacaagatggtacagttttc
atcggttcaactgagcaagacatgatcaatcaagcacgtgcatggattgaaagtatcgtg
cgtgaagcagaagtcggtcaagtgtatgatgcaaaagtaaagcgcattgaaaaattcggt
gcgtttgtggaactgttcccaggtaaagatgcattagttcatatttcacaaatttcgaac
gaacgcattaacaaagtggaagatgtattgaacatgggtgatacactgaaagtgaaagtg
actgagattgacaaacaaggtcgtgtgaacgcttctcataaagtgttgctttaa
DBGET
integrated database retrieval system
