Staphylococcus pseudintermedius HKU10-03: SPSINT_1329
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Entry
SPSINT_1329 CDS
T01396
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ssd
Staphylococcus pseudintermedius HKU10-03
Brite
KEGG Orthology (KO) [BR:
ssd00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SPSINT_1329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssd03021
]
SPSINT_1329
Transcription machinery [BR:
ssd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SPSINT_1329
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
Myo5a
tify
Motif
Other DBs
NCBI-ProteinID:
ADV05857
LinkDB
All DBs
Position
complement(1377068..1378177)
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AA seq
369 aa
AA seq
DB search
MSDNQVKVIKKETIDPTLTLEDVKKQLIEKGKKEGHLSHEEVADKLQNFDMDSDQMDEFF
DMINDNDIQLINEKDSSDTDDKLNPNDLSAPPGVKINDPVRMYLKEIGRVDLLSAQEEIE
LAKRIEQGDEVAKARLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFSK
GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEI
GEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQ
LEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSR
SKRLKDFMD
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgtcagataaccaggtaaaagtaatcaaaaaagaaaccatcgatccgacactcacatta
gaagatgtaaaaaaacaacttatagaaaaaggtaaaaaagaaggtcatctaagtcatgaa
gaggtagcagataaattacaaaattttgatatggattctgatcaaatggacgaatttttc
gacatgattaacgacaatgacattcaacttattaatgaaaaagacagttctgatacagat
gataaattgaaccccaatgatctaagtgcacctccaggcgttaaaattaatgaccctgta
cgtatgtatttaaaagagatcggtcgtgtcgatttgttaagtgcacaagaagaaattgag
cttgccaaacgcattgaacaaggtgatgaagtagcgaaagcacggttagctgaagcgaac
ttacgtcttgttgtcagcattgctaaacgttatgtcggtcgtggcatgctatttttagat
ttaattcaagaaggtaatatgggcctcatcaaagcagttgaaaaatttgattttagtaaa
ggtttcaagttttctacttatgcgacatggtggattcgacaggcgattacacgtgcgatt
gctgaccaagcacgtacgattcgcattccagtacacatggttgaaacgattaataaactg
attcgtgttcaacgtcaattattgcaagatttaggtcgtgatcccgcacctgaagaaatt
ggtgaagaaatggatttaccaccagaaaaagttcgagaaattcttaaaattgctcaagaa
ccagtgtcacttgaaacaccaattggcgaagaagacgatagccatcttggagattttatt
gaagatcaagaagcacaaagcccgtctgatcatgcggcttatgaattgttgaaagaacag
ttagaagatgttctcgatacattaactgaccgtgaagaaaacgtattacgcttacgtttt
ggtttagatgatggtcgtacacgtacacttgaagaagtaggtaaagtgttcggtgttacg
cgtgaacgaattcgtcaaatcgaagctaaagcattacgcaaattaagacatccaagtcga
agcaaacgcttaaaagactttatggactaa
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