Staphylococcus pseudintermedius HKU10-03: SPSINT_1741
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Entry
SPSINT_1741 CDS
T01396
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ssd
Staphylococcus pseudintermedius HKU10-03
Pathway
ssd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPSINT_1741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssd03019
]
SPSINT_1741
03009 Ribosome biogenesis [BR:
ssd03009
]
SPSINT_1741
Enzymes [BR:
ssd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPSINT_1741
Messenger RNA biogenesis [BR:
ssd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPSINT_1741
Ribosome biogenesis [BR:
ssd03009
]
Prokaryotic type
rRNA helicases
SPSINT_1741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
SUa-2TM
CMS1
Cas3-like_C_2
AAA_30
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ADV06269
LinkDB
All DBs
Position
complement(1820119..1821606)
Genome browser
AA seq
495 aa
AA seq
DB search
MQKFTELGVSERTAETLEAMGFTEPTPIQKDSIPFALENIDILGQAQTGTGKTGAFGIPL
IEKVVGKEGVRALILAPTRELAMQVAEQLREFSRGQKVQVVTVFGGMPIDRQIKSLKRGP
QIVVGTPGRVIDHLNRRTLKPQQIETLILDEADEMMNMGFIDDMRYIMDKLPSENRQTML
FSATMPKAIQELVQKFMKSPRIIKTMNNEISDPQIDEYYTIVKELEKFDTFTNFLDVHQP
ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA
ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKHGIAVTFVNPIEMDYIRQIEQTNR
RQMRALRPPHRKEVLKAREDEIKSKVQSWMDAAKEPRVENIAKQLLETYDQTELVTALLQ
ELVESNDEVDVQLTFEKPLARKNGRSPKGNRKGGNNKRHSKAGRNHKPSGNKKGNFKHKR
ETKVKKGRTFADHQK
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaaatttacagaattaggcgtttcagaacgtacagctgaaaccctcgaggcaatg
ggatttacggagccgacccctattcaaaaagatagtatcccattcgcactcgaaaacatt
gatatcctaggtcaagcgcagaccggaacaggaaaaacaggtgcctttggtattccattg
atcgaaaaagttgttggaaaagaaggcgtgcgtgctttaattttagcacctacacgtgaa
ttagcgatgcaagtagctgaacaattacgtgaattcagccgtggtcaaaaagtccaagtc
gttactgtatttggtggtatgccaatcgaccgtcaaatcaaatcattaaaacgcggacca
caaatcgtagtaggtacaccaggtcgtgtgattgaccaccttaatcgccgtacattaaaa
ccacaacaaatcgaaacgttaattttagatgaagcggacgaaatgatgaacatgggcttc
attgacgatatgcgttatattatggataaattgccatcagaaaatcgtcaaacgatgtta
ttctcggcaacaatgccaaaagcgattcaagaattagtacaaaaatttatgaaatcgcca
cgtatcattaaaacgatgaataatgaaatttctgacccacaaattgatgaatattatact
atcgttaaagaacttgaaaaattcgatacctttacgaatttcttagatgtacaccaacct
gagttagcgattgtgttcggtcgtacaaaacgccgtgtcgatgagttaactagtgcgtta
ctttcaaaaggttacaaagctgaaggtttacacggtgatatcacacaggcgaaacgtttg
gaagtattgaaaaagttcaaaaacgaccaaatcgatattttagttgcgacagacgtagcg
gctagaggattagacatttcaggtgtgagtcatgtttataactttgatattcctcaagat
acagaaagttatacacaccgtattgggcgtacaggtcgtgcaggtaaacatggtatcgcc
gtgacattcgttaatccaattgaaatggattatatccgtcaaatcgagcaaacgaaccgt
cgccaaatgcgcgcgttaagaccgccacatcgtaaagaagttttaaaagcacgtgaagat
gaaattaagagcaaagttcaaagttggatggacgctgcgaaagaaccacgtgtagaaaac
atcgcgaaacaacttcttgaaacatatgatcaaactgagcttgtaacagcgttattacaa
gaattagtggaatctaatgatgaagtcgatgtacaattaacatttgaaaaaccgttggcg
cgtaaaaatggtcgttcaccaaaaggcaatcgtaaaggtggcaacaacaaacgtcattca
aaagcaggacgtaaccataagccaagtggtaataaaaaaggcaacttcaaacataaaaga
gaaacaaaagtgaaaaaaggacgcacatttgcggatcatcaaaaataa
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