Candidatus Profftella armatura DC: SSDC_01810
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Entry
SSDC_01810 CDS
T02777
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ssdc
Candidatus Profftella armatura DC
Pathway
ssdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SSDC_01810 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssdc03021
]
SSDC_01810 (rho)
03019 Messenger RNA biogenesis [BR:
ssdc03019
]
SSDC_01810 (rho)
Transcription machinery [BR:
ssdc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SSDC_01810 (rho)
Messenger RNA biogenesis [BR:
ssdc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SSDC_01810 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA_25
OB_RNB
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AGS07046
UniProt:
S5RM63
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All DBs
Position
complement(433163..434320)
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AA seq
385 aa
AA seq
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MFAIFKKKTKIGERIFGDGSLEVLPDGFGFLRSQGSNYMASSDDIYLSPSQIRRFNLHTG
DFVEGEIRVPKNGERYFALLKIKKVNGEKPELSKNRTLFDNLTPLHPKKLLLLERNIESK
ENITGRIIDLIAPIGKGQRGLLVASPKSGKSIILQHIAHAITTNHSEAIMIVMLIDERPE
EVTEMQRSVRGEVIASTFDEPAYRHVQVAEMVLEKAKRLVEMKKDVIILLDSITRLARAY
NTVIPASGKVLTGGVDSNALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEE
FKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIQDDKLQKIWVLRKLLYSMDEIE
AMEFFLDKMKSTKNNFEFFNMMKQG
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcaatttttaaaaaaaaaacaaaaattggagaaagaatatttggtgatggttca
ttggaagttttgccagatggttttggatttttacgttcacaaggtagtaattatatggca
tcttcagatgatatatatttatcaccatctcaaatacgtcgattcaatttacataccggg
gattttgtggaaggtgaaataagagttccaaagaatggagagcgttattttgctttatta
aaaattaagaaagttaatggtgaaaaacctgaattatcaaaaaatagaactttatttgat
aatttaactccattacatccgaaaaaattattattattagagcgaaatatagaaagtaaa
gaaaatattactggaagaattattgatttaatagcgcctattggaaaaggtcaacgtggt
ttactagttgcgtcaccaaaatccggaaaatctataatattgcaacatattgctcatgca
attactactaatcattcagaagctataatgattgtaatgttaattgacgaaagacccgag
gaagtaacagaaatgcaacgttctgtaagaggagaagttattgcatcaacttttgatgag
cctgcttatcgtcatgtgcaagtagctgaaatggttttagaaaaagcgaaacgtttagtt
gagatgaaaaaagatgtaataattttattagattcaattactagattagcgcgagcttat
aatacagttattccagcatctggaaaagtacttacaggaggagtagattctaatgcatta
caaagaccaaaacgtttttttggggcagcacgaaatattgaagaaggcggttcattaact
attattgcaaccgcattaattgaaactggtagtcgaatggatgatgttatatatgaggaa
tttaaaggaacaggtaatatggaagttcatttagaacgtcgtttagcagaaaaaagagtc
tatcctgctataaatttaaataaatccggtactcgtcgtgaagaattattaattcaggat
gataaattacaaaaaatttgggtattacgaaaattgttatatagtatggatgaaattgag
gcaatggaattttttttggataaaatgaaatcaacaaaaaataactttgaattttttaat
atgatgaaacaaggctaa
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