Shewanella sediminis: Ssed_0096
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Entry
Ssed_0096 CDS
T00596
Name
(GenBank) DNA-directed DNA polymerase
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sse
Shewanella sediminis
Pathway
sse03030
DNA replication
sse03410
Base excision repair
sse03420
Nucleotide excision repair
sse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ssed_0096
03410 Base excision repair
Ssed_0096
03420 Nucleotide excision repair
Ssed_0096
03440 Homologous recombination
Ssed_0096
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sse03032
]
Ssed_0096
03400 DNA repair and recombination proteins [BR:
sse03400
]
Ssed_0096
Enzymes [BR:
sse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Ssed_0096
DNA replication proteins [BR:
sse03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Ssed_0096
DNA repair and recombination proteins [BR:
sse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Ssed_0096
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ssed_0096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
WH_GTF3C1_N
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ABV34709
UniProt:
A8FPD6
LinkDB
All DBs
Position
complement(106612..109413)
Genome browser
AA seq
933 aa
AA seq
DB search
MLAASSKIKNRILIMPKIAENPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVINML
RSLLNQYKPSQMAVVFDAKGKTFRNDMYEEYKAHRPAMPDDLRSQIEPLHRIIRALGLPL
VCIPGVEADDVIGTISTQASKEGRAVLISTGDKDMAQLVDENVTLINTMTNTIMGPSEVT
EKFGVGPELIIDLLALQGDKADNIPGLPGVGEKTALAMLTGAGSIDKILAAPEKMPELGF
RGSKTMPAKLAEHGDMLKLSYELATIKLDVELEQDWKDLTIAPADKDELIKCYGEMEFKR
WLAEVLDNRSGSSASTQTSTEEDELPKQDIKTEYSTILTHDELDEWIDKLSKAELFAVDT
ETTSLNYMEAKLVGLSFAVEAGKAAYLPLAHDYLDAPQQLNQAEALAKLKPLLENPEIKK
VGQNLKYDMSILANVGIKLQGIAFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEI
AGKGAKQLTFNQISLEVAAPYAAEDADITLRLHQHLWPRLQKEPELASIFTEIELPLVQV
LSDMERQGVLIDSMLLGQQSEELARTIDELEQKAYEIAGESFNLSSPKQLQVLFFEKLGY
PIIKKTPKGAPSTAEEVLVELALDYPLPKIILQHRSLAKLKSTYTDKLPLMVNAQTGRVH
TSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAREGRKVLAADYSQIELRIMAH
LSQDKGLLTAFAEGKDIHKATAAEVFDVDFTEVTTEQRRRAKAVNFGLIYGMSAFGLARQ
LDIPRGEAQKYIDTYFKRYPGVLNYMEETRAIAADLGYVSTLYGRRLYLPAIKDRNAMRR
QAAERAAINAPMQGTAADIIKKAMINVADWIANETDGEITLIMQVHDELVFEVDSDKAEA
LQEKVCQLMAEAADLDVELLAEAGLGDNWEQAH
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgctagcggcatcatcgaaaatcaaaaaccgaatactcattatgccaaaaattgctgaa
aaccctttagttcttgtggatggttcctcctacctatatcgagcttattatgcgccacca
catctaacaaactctaaaggtgaagcaaccggggctgtctatggcgtaattaatatgctt
cgtagcctgcttaatcaatataagcccagccagatggccgttgtattcgatgcgaaagga
aaaacctttcgtaacgatatgtatgaagagtacaaagcgcatagaccagcgatgccggat
gatctgcgttctcaaatagagccactgcacagaataatacgtgctctgggcttacctctg
gtttgcattcccggcgtcgaagccgatgatgttatcggtaccatctctactcaagccagt
aaggaaggtcgagccgtccttattagtacgggtgataaagacatggctcagctggtcgat
gagaatgtcacgcttatcaatactatgactaacaccataatgggaccctctgaggttacc
gagaaatttggcgtcggtcctgaattaatcatcgatctgttagcacttcagggggacaag
gctgacaacattcccggcctgcctggtgtcggagaaaaaacggcccttgccatgttaacc
ggcgcaggaagcatagataaaattcttgctgcaccagaaaaaatgcctgagctcggtttc
agaggctctaagaccatgcccgctaaattagccgagcatggtgatatgttgaagctatcc
tacgagctcgcaaccattaaactcgatgtcgaacttgagcaggactggaaagatctcacc
atagctccggctgacaaagatgaattgataaaatgctatggcgagatggagttcaagcgt
tggttggcagaagtgcttgataacaggagcggctcaagtgcatcgactcaaacgtcaacg
gaagaagatgaacttcctaaacaagatatcaaaactgaatactcgacgattcttacccat
gacgagcttgatgagtggatcgataagctgtcaaaagccgagctttttgcggtcgacacc
gaaactaccagcctcaactatatggaggcgaaacttgtcggtctctcttttgctgtagaa
gcgggtaaagcagcctatctgcccttagcccatgactatcttgacgcgccacagcaactt
aaccaagccgaagcattggccaagttgaaaccattgctggaaaatccagagattaaaaaa
gtgggccagaatttaaaatatgacatgagtattctggctaatgtcggcataaagctgcag
ggtatcgccttcgatactatgctcgaatcatatgtattcaactcggtcgcatccaaacac
aacatggatgacttggcactgaaatacctgggccataaaaatatcagttttgaagagatc
gcggggaaaggggcaaaacagcttaccttcaatcagatttcattagaggtcgccgcacct
tatgcggccgaagatgctgacatcaccctaaggttgcaccaacacctctggccaagatta
caaaaagagccggaattagcctcaatatttaccgaaatagagctgcctctggttcaagtg
ctttccgatatggagcgccaaggggtgcttatcgacagcatgctattgggtcaacagagc
gaagagctggccagaaccatcgatgagcttgagcagaaggcttatgaaatcgccggtgaa
tcctttaacttaagctcaccaaaacagctgcaagtgctcttctttgaaaaactgggctac
ccgatcatcaagaagacgcctaaaggtgcgccatcgaccgcagaagaggtgttagttgag
ctagccttagattacccattacctaagattattctgcagcacagaagcttagcaaaacta
aagagtacctataccgataaactaccgctgatggtcaatgcgcagaccggccgtgttcat
accagttaccaccaggctaatgccgccaccggacgcctgtcttccagtgagccaaacctg
caaaacatccccattcgaaccgaagagggacgacggatccgtcatgcatttattgctcgg
gaaggcaggaaggtacttgctgccgattactctcaaattgagctacgcatcatggcacac
ctttctcaggacaaaggtttactgaccgcatttgcagaaggtaaagatattcataaggcg
actgcagcagaggtcttcgatgttgacttcacagaggtcacaaccgagcagagacgccgc
gccaaggcggttaactttggtttgatctatggcatgtccgcatttggactcgctcgccag
cttgatatcccacgtggtgaagcccaaaaatacatagatacctactttaagcgttatccg
ggcgtacttaactatatggaagagacacgggcaatcgcagccgatctgggttacgtctct
acactctatggacgacgtttatatctaccggcaattaaagatagaaatgccatgcgacgt
caagctgccgagcgagccgcgattaacgctccgatgcaaggcaccgcagccgatatcatc
aagaaagccatgattaatgttgcagactggattgctaatgaaactgatggtgagatcacc
cttatcatgcaggtgcacgatgaattagtatttgaggtcgacagtgataaagccgaagca
cttcaggaaaaggtatgtcagttgatggcggaagctgccgatcttgatgtggaactgtta
gccgaagctgggctcggtgacaactgggagcaggctcactag
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