Shewanella sediminis: Ssed_0117
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Entry
Ssed_0117 CDS
T00596
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sse
Shewanella sediminis
Pathway
sse03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Ssed_0117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sse03400
]
Ssed_0117
Enzymes [BR:
sse01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Ssed_0117
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Ssed_0117
DNA repair and recombination proteins [BR:
sse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Ssed_0117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
ABV34730
UniProt:
A8FPF7
LinkDB
All DBs
Position
complement(130893..131714)
Genome browser
AA seq
273 aa
AA seq
DB search
MNMPELPEVEVTRQGITPHLVDQQATALTVRNASLRWPVPDIAQQIVGETIRNVRRRAKY
LLIDTDAGTTIVHLGMSGSLRIVSRNTPVEKHDHIDLELASGKILRFNDPRRFGAWLWCE
LPEEAHPLLSKLGPEPLKDGFNPTYLEQILKNKKKAIKLCLMDNHIVVGVGNIYANEALF
AAGIHPETQAGNVDTERLTILVTEVKQILANAIKQGGTTLKDFTNAEGKPGYFAQKLHVY
GRGGETCTQCGNLLSEIKLGQRATVFCGLCQTK
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgaatatgcctgaattgcccgaagtagaagttacccgtcaggggatcactcctcattta
gtcgatcaacaagcgacggcactcactgtgcgtaacgccagccttcgctggccggtaccg
gatatcgcacagcagatcgtaggggagaccattcgaaacgtgcgtcgtagggcgaagtac
ctgcttatcgataccgatgccggcacgacaattgtgcatcttggcatgtcgggaagtctg
agaatcgtctccaggaacacgcctgtcgagaagcatgatcatatcgatttagagctggcc
agtggcaaaatactgagatttaacgacccacgccgcttcggtgcctggctatggtgtgaa
ctgcccgaagaggcgcatccactgctgtcaaagctcggacctgagccgctaaaagacggc
tttaatcccacctatcttgaacagatattaaaaaataagaagaaagccattaagctctgt
ttgatggataaccatattgttgtgggtgtcggtaatatctatgccaacgaagccctgttt
gcggcaggcattcatcccgaaacgcaggcgggcaatgtcgacaccgagaggttgacgatt
ctggttaccgaggtaaaacagatcttagcgaacgccatcaagcagggagggaccacattg
aaagacttcaccaatgccgaaggaaagcctggatactttgcccagaagctgcatgtttac
gggcgaggcggtgagacctgcacccaatgtggcaatctgctcagcgagatcaagctgggc
cagagggccacagtattttgtggcctatgtcagactaaatga
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