Shewanella sediminis: Ssed_0131
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Entry
Ssed_0131 CDS
T00596
Name
(GenBank) TonB-dependent receptor, plug
KO
K16092
vitamin B12 transporter
Organism
sse
Shewanella sediminis
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sse02000
]
Ssed_0131
Transporters [BR:
sse02000
]
Other transporters
Pores ion channels [TC:
1
]
Ssed_0131
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TonB_dep_Rec_b-barrel
Plug
OMP_b-brl_3
HopJ
Motif
Other DBs
NCBI-ProteinID:
ABV34744
UniProt:
A8FPH1
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Position
146463..148496
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AA seq
677 aa
AA seq
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MKVQQKIIKMSAIALAIGSSGAVFADDIDRDPILNVNEVIVVHGERPTATEVATTHWSID
EDEIKALGAQSLEQVLKNVPGVYVRTGGQGTPRVDIRGFKTRHVTLLINGVPANGAEDGQ
FDPSVIPTSQIASVEVSVGPTSVLYGPGGAGGVINIITKQGDDASTLSGRLEASGEDTFN
GDISAAGSGDNWQGLVSVSHQQTNGFPLSGDYPHNDVQLDDVRANSDKEIDNIYAQGSYW
LSDNTQVTANMSLRSGQWGKPSRDGSGSGTVKFERADDYDAKTFQLGMAHKFSEMFTLRG
FGYHNQSDVLETQYTDSSYTKVKQSQDGRSKVQGGNLQFITNFGDVGLLTSSLIAENQSW
ESTTSKPSTGDKSSQKQSRVLDGYSGGSGGGNGGGSSNFDDSAWLYTLAAEYQYQDDGYY
GFTIGGALHDQDRVKESENDYSGQLSGFWQAFEQTRFNAGIARKVRFPSMKNLYSQSSGN
ADLVAETSKHFELGVEQELGASTALSVAGYYTDAENYIAKDMSGVYQNMGRYQFKGVDVS
LNNQFIDDLSLTFVYSFLDTEDKDAFDGMGTLEYRPRHQLRFQADYELPFAMRINMNIER
IMGQVYYEQEKVNGNKVWTEQSLKDYTLLDLNLVQPVLDDKLELYIRATNLLDENYYQSD
AIPQAGRQVFVGISWQI
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtacaacaaaaaataataaaaatgtcggcaatcgcgcttgccatcggtagtagt
ggagccgtatttgcggacgacatagatagagacccaatcctcaatgtaaacgaagtcatc
gttgttcatggcgagagaccgaccgcgacagaagtggctacgactcattggagtatcgat
gaggatgagataaaagcgctgggggctcaaagcttagaacaagtgcttaaaaatgtgcct
ggcgtatatgtaagaaccggcggacagggtacaccaagggtagatattcgtgggtttaag
acacgacacgttaccttgctcattaatggtgtgccggcaaatggtgccgaagatggccag
tttgatccaagtgtgatcccaaccagtcagatcgcttctgtcgaagtttcagtagggccg
acatcggttctttatggccccggcggagccggtggtgtgattaatatcatcaccaagcag
ggagatgatgcctctactttgtcggggcgattagaggcgtccggcgaagataccttcaat
ggtgacattagcgctgcggggtcaggtgataattggcaaggtttggtcagtgtcagtcat
caacaaacgaatggtttcccactgtcaggtgattatccacataacgatgttcagcttgat
gatgtcagggctaactctgataaagagatcgataatatttatgctcaggggagctattgg
ttatcagacaatacccaagtaactgccaatatgagcctgcgttcgggccagtggggcaag
ccttcacgagatggtagcggtagcggaaccgttaagtttgagcgggccgatgactatgat
gcaaaaaccttccagttaggcatggcacataaattcagtgagatgttcacccttagaggt
ttcggttatcacaatcagagtgatgtgctggagacacaatataccgattccagctatacc
aaggtgaaacagagtcaggacggacgctcaaaggtacagggcggaaatctgcagtttatc
accaatttcggtgatgtgggtttgctgacgagttctcttatcgctgaaaatcagagctgg
gagtccacaacatccaagccatcgacaggtgacaagtcgagtcagaagcagagtcgggta
ctcgatggctatagcggcggaagcggtggtggaaacggcggtggaagcagcaacttcgat
gactcggcgtggctctataccttagccgccgaatatcaatatcaggatgatggctattat
ggtttcaccataggtggtgctcttcatgatcaagaccgtgtcaaagagtctgagaatgat
tactcagggcagctgtccggattctggcaagcatttgaacagacacgtttcaatgcggga
atcgcaagaaaagttcgcttcccttcgatgaagaacctgtactcacaatcttcaggaaat
gccgatttagttgcagaaacatctaaacattttgaactcggtgttgaacaagagctggga
gcatcgacggcgctatccgttgcgggctactacaccgatgccgagaactatattgccaag
gatatgtcaggtgtctatcaaaatatggggcgctatcagttcaaaggggtcgatgtgtct
ctgaataaccagttcattgacgatctgtcattaacctttgtctatagctttttggacacc
gaagacaaagatgctttcgatggcatggggactttagagtatcgcccaaggcatcagctt
cgttttcaggcagattatgagcttccttttgcgatgcgaatcaacatgaatattgaacgg
atcatgggacaggtctactacgaacaggagaaggttaacggtaataaagtttggaccgag
cagtcattaaaagattacaccttgttggatttgaacttagttcaacctgtattggatgac
aagctggagctctacatcagggcgacaaacttgttagatgaaaactattaccaaagcgat
gccattcctcaggctggacgacaagtctttgtcggcattagctggcagatatag
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