Shewanella sediminis: Ssed_0346
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Entry
Ssed_0346 CDS
T00596
Name
(GenBank) formate hydrogenlyase transcriptional activator, putative
KO
K15836
formate hydrogenlyase transcriptional activator
Organism
sse
Shewanella sediminis
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sse03000
]
Ssed_0346
Transcription factors [BR:
sse03000
]
Prokaryotic type
Helix-turn-helix
Other families
Ssed_0346
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_5
AAA_2
HTH_8
AAA
GAF_2
AAA_7
Motif
Other DBs
NCBI-ProteinID:
ABV34959
UniProt:
A8FQ36
LinkDB
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Position
402419..403975
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AA seq
518 aa
AA seq
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MIFNGSHSEESMEKFYYKATQCLCSSLQLEESLQSYFDYIKSHLPIDGIYLNIYRPDFSD
IQFIAQVNDQQSSTLDRRIPISNEMCEALQDLDRPIIRIVNDIELDTVTQFVAPQVIPEI
KSVILLRMVSGNTHLGVVGFYAKQAGVFRPRHVDMLEPHMQTFSLITAFNLKGRNLLRAN
EALAEQNQSLKRTLNICNGVVGAHSGLKHVMQQVESIAKLNTTVLMLGETGCGKEVIANA
IHELSLRANKPFIKVNCGAIPESLIDSEMFGYERGAFTGAESRKAGYFEQANGGTIFLDE
IGELPLSVQVRLLRVLQNSTITRVGGHDSVQLDIRVIAATHRNLKAMVSTGEFREDLWYR
LAIFPIEIPSLRQRRTDIPLLVQHFIEMLSAKFNQDQLPRVAPEQLAILSQYHWPGNVRE
LINVLERAIIQHPKGPLNFDFLVPEVKAEHKEKRGETIIVDPSHATDKLVPLETMTRKYI
EHALRVTGGKLYGPGGAAQLLDINPNTMRSKMKKLGIC
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgatatttaacggtagccattcagaagaatcaatggaaaagttctattacaaagcgact
caatgtttatgcagtagtcttcagttagaagagtcactacagagctactttgattacatt
aaatcccatcttccaatcgatgggatctatctgaatatctatcgtcccgatttcagcgat
attcagtttatcgcacaggtaaatgatcagcagtcttctaccctggatagacggatacct
atcagtaacgagatgtgtgaggctcttcaggatctcgacaggccaattattcgtatcgtt
aatgatattgagctcgatactgtgacccaatttgtcgcccctcaggtcattcccgaaatt
aaatcagtcatcttgttgagaatggtttccggaaatacccaccttggggtcgtcggcttt
tatgccaagcaagccggcgtattcaggccacgacatgtggatatgcttgagccccacatg
cagactttctctttgataaccgcttttaaccttaaggggcgcaacttgctcagagccaat
gaagctctggctgagcagaatcagtctcttaagcgtaccttgaacatctgtaatggtgtt
gtcggtgctcattctggtctgaagcatgtgatgcaacaggttgagtctattgccaaactc
aatacaacagtcttgatgttgggcgaaaccggttgtggtaaggaggtcatagcaaatgct
attcatgaactctcattgcgcgccaataagccatttatcaaggtcaactgtggtgcgatt
cccgagagcctgatcgattctgaaatgttcggctatgagaggggggctttcaccggcgcg
gagtctcgcaaggccgggtattttgagcaagccaatggcggcactattttcctggatgaa
atcggtgagctaccactgtcggtccaggtcaggctactcagggtattgcaaaatagtacc
attacccgtgtaggtggccacgattccgtgcagctggatatcagagtcatcgccgcgacg
caccgtaacctcaaggcgatggtgtcaacgggcgagtttcgtgaagatctctggtaccgc
ttggctattttcccgattgagattccctctctgagacagaggcgtaccgacattcctctg
ctagtgcagcattttatcgagatgctgtcggcaaaattcaaccaagatcaacttccccgg
gttgcgccagaacagctggccattctgagtcagtatcattggcccggtaatgtcagggag
ctgataaacgtgcttgagagagccattattcagcaccccaaggggccgcttaatttcgat
ttcctggtgcctgaggtgaaagccgagcataaggagaagaggggagagaccattattgtc
gatcccagtcatgcaaccgataaactggtgcctctggaaaccatgacccgaaaatatatc
gagcatgcgctgcgggttacagggggaaagctctatggcccgggtggtgccgctcagttg
ctggacatcaacccgaataccatgcgtagtaagatgaaaaaattaggtatctgctaa
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