Shewanella sediminis: Ssed_0539
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Entry
Ssed_0539 CDS
T00596
Name
(GenBank) diguanylate cyclase/phosphodiesterase
KO
K18765
RNase E specificity factor CsrD
Organism
sse
Shewanella sediminis
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sse03019
]
Ssed_0539
Messenger RNA biogenesis [BR:
sse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Ssed_0539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
Motif
Other DBs
NCBI-ProteinID:
ABV35151
UniProt:
A8FQM8
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All DBs
Position
658641..660551
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AA seq
636 aa
AA seq
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MKLTQILTRKLTGFWLLSLAAVAFIFLLTALVSFTQLTYKFQQQKVSEIESMLVHHYEHD
SNSALSSWLPSILTAYKASKFQLLENGQPIYEYQTDDAGKGHVTYESVLIEERHLKLSMT
LPQPFQMYDLSWYELLILSGGIISVAFFVRFGHQWLSVQLVGIEDLAARSKLILNNEYEQ
ALAEKGHGKPRMINRALTHMLLELDDAQKQRARFDQFIRSNTFLDPETGIGNRLFLKNRL
DALSNARGMMAPGVMFLLEMEDLDLLQQELADESIEALLLQTINDINQILDTQANSIFAR
RSYNQFAIVVPQISLKDAEKLAVKLLKVCLSQALPATQNSDDFYHIGVAYFKVGETKEQL
LDESERALRAAQFQGASGWFMYDKGAVDEEFAKGSVRWRSFLEYALVNRRLVVFSQPVVD
SDMETHHLEISSRIRDNQDNLIRATLYIPMAIKCGLTPQFERQVIETVLFDLLSDRSDTT
TRYSVNLSLDTLLSRAFIRWLKTTLLEYRHLTSRLIFEVNEDIVVHHREQLKDRLDMIRK
MGASLCVDRVGQEVVSTQYIKECHFDLIKLHRSIVRQIHLRQENQLFVRSLIGGLYRTDV
QVFADGIESFEEWQTLKILGVSAGQGSIFSDPIEEV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaactaacacaaattttaaccagaaaactcacggggttttggctactgtctcttgcc
gcagtggcttttatattcctgcttaccgccttggtcagttttacacagctgacctataag
tttcagcaacaaaaagtgtcagagattgagtctatgcttgtgcatcattacgagcacgac
agtaacagcgctctatcctcctggcttccctctattttgactgcctataaggcatcaaaa
tttcaactgctggaaaatggtcaacctatatatgagtatcaaactgatgatgctggtaaa
ggccatgttacttacgagagcgtgctgatcgaagagcggcatcttaagctctccatgacg
ctcccacagccgtttcaaatgtatgatttaagttggtatgaactccttatcctgtctggc
ggcatcatatcggtggcattttttgttcgatttggacatcaatggttgtcagttcagctc
gtggggatcgaagatctggcggctcgaagtaagcttattttgaacaatgaatatgagcag
gcactcgccgagaaagggcatggtaagcccaggatgattaaccgagccttgactcatatg
ctgctcgaactcgatgatgcccaaaagcagcgggcgaggttcgatcagtttattcgttca
aatacgtttctcgatcctgaaaccggaattggtaaccgactatttttgaagaatcgctta
gacgcactgagtaatgctcgtggaatgatggctcccggagtgatgtttcttttggagatg
gaagatctcgatctcctgcagcaggagttagccgacgagtcgatagaggctctgctgcta
cagaccatcaatgatattaatcagatattagatactcaggctaacagtatatttgcccga
cgctcatataatcagttcgccattgttgtgccacagatctccttgaaagacgccgagaaa
ttagcggtaaaactgcttaaggtatgtttgagtcaagcattaccggcaacacaaaatagt
gatgatttctatcatattggtgtcgcctattttaaggtgggtgagactaaagagcagttg
ctggatgagtctgagcgggcactgagagcggctcaatttcaaggagccagtggttggttt
atgtatgataaaggggccgtggacgaagagtttgccaagggctccgttcgttggcgaagc
ttcctcgaatatgccctggttaatcggcggctggtcgttttttctcagccagtagttgat
agtgatatggagacgcatcatctcgaaatttcgagtcgtatccgtgataatcaagacaac
ctaatcagggcgaccctctatattcctatggctattaagtgtggtctaacgcctcagttt
gagaggcaggtgatcgagaccgtgctgtttgatctgctcagtgaccgcagcgacaccacc
acaagatacagtgtgaatttgagtctggataccttgctaagccgcgcctttatccgctgg
cttaaaaccaccttgctggaatatcgacacctgacctccagactgatattcgaagtcaat
gaagacatcgtcgttcatcatagagagcagctaaaagatcgtctggatatgatcagaaag
atgggggcaagcctctgtgtcgatcgggtagggcaagaggtggtgagcactcaatatatc
aaagagtgtcatttcgacctgatcaaacttcatcgttcaatcgttcgtcagattcattta
aggcaagaaaatcaactgtttgttcgtagtctgattggagggttataccgcaccgatgtt
caggtttttgccgatggcatcgaatcatttgaggagtggcaaaccttgaaaatcctgggg
gtgagcgcggggcaagggagcatcttcagcgaccctattgaagaggtctag
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