Shewanella sediminis: Ssed_0600
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Entry
Ssed_0600 CDS
T00596
Name
(GenBank) histone family protein DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
sse
Shewanella sediminis
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sse03032
]
Ssed_0600
03036 Chromosome and associated proteins [BR:
sse03036
]
Ssed_0600
03400 DNA repair and recombination proteins [BR:
sse03400
]
Ssed_0600
DNA replication proteins [BR:
sse03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
Ssed_0600
Chromosome and associated proteins [BR:
sse03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
Ssed_0600
DNA repair and recombination proteins [BR:
sse03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
Ssed_0600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-DNA_bdg
HU-CCDC81_bac_2
HU-CCDC81_euk_1
Urease_beta
Peptidase_C80
NA37
HTH_IclR
UBA_HYPK
Motif
Other DBs
NCBI-ProteinID:
ABV35212
UniProt:
A8FQT9
LinkDB
All DBs
Position
complement(731198..731470)
Genome browser
AA seq
90 aa
AA seq
DB search
MNKTELVAKIAENAELTKAEAARALKSFEETVTEAMKNGDKISIVGFGSFETSNRAARTG
RNPQTGKEIQIPAATVPKFKAGKTLKDSVN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
atgaataagactgaacttgttgcaaaaatagctgagaatgcggaactgactaaagcagaa
gctgcacgcgcactaaaatcttttgaagagactgtcaccgaagcgatgaaaaatggtgat
aagatctctatcgttggttttggttcttttgaaacttctaatcgcgctgcacgcactggt
cgtaacccacaaacgggtaaagagatccaaatcccagcagcgaccgttccaaaatttaaa
gctggtaagactctgaaagatagcgttaactaa
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