Shewanella sediminis: Ssed_0625
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Entry
Ssed_0625 CDS
T00596
Name
(GenBank) SNF2-related protein
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
sse
Shewanella sediminis
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sse03021
]
Ssed_0625
Transcription machinery [BR:
sse03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
Ssed_0625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_34
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ABV35237
UniProt:
A8FQW4
LinkDB
All DBs
Position
complement(753945..756851)
Genome browser
AA seq
968 aa
AA seq
DB search
MPFSLGQRWISDTESELGLGTVVALEGRMVTLMFPATDENRLFSRTDAPLTRVIFNPGDK
AESHEGWSLTVSEVEEKDNLIIYHGIHSETGEQASLRETLLNHNIRFNKPQDRLFAGQID
RLERFGVRYQCQLLRHKLATSDLLGLQGPRVGLIPHQQWIAHEVGRRFAPRVLLADEVGL
GKTIEAGLIIHQQLLTGRAERILVIVPDTLRHQWLVEMLRRFNLKFSVFDEDRCIEAYAD
NDNPFYTEQLVICSLELLRKKKRLEQALDADWDLMVVDEAHHLEWTEDAPSRAYRVVEAL
SEVVPGVLLLTATPDQLGHQSHFARLRLLDPDRFYDYEAFLKEESSYKDVASAADALASG
NKLPDDAINSLTELLSEKDITPSINVIQATDIDPDQQQDARDELLQELLDRHGTGRVLYR
NSRASVKGFPTRIFNAYPQAMPSQYVTAARVGAMMNGHLDTQGKVKQALSPEKIYQDFDS
NSASWWKFDPRVDWLINFLKENRRKKVLIIASQAETALSLEEALRTREGIQTTVFHEGMS
IIERDKAGAYFAQETGGAQALICSEIGSEGRNFQFASQLILFDLPLNPDLLEQRIGRLDR
IGQNNDVEIHVPYLEKTAQECLMQWYHKGLNAFEQTCPSGHILFSEFAEPLLDVLINQND
DSLTELLNHTQTRYKELKTVMEQGRDKLLEINSHGGERANKLVQSLAARDEDTQLIGSVI
RLWDVIGVEQEDCGENAIVLNPSEHMMFPTYPGLPEDGITVTFDREMALSRDDIALITQE
HPIVQTGLDLITSSETGTTSVAVLKNKALPAGTIFLELIYMADASAPKSSQLYRYLPPTP
VRILLDKNGNNLSDNVTYESFNKQLSAVNRHIASKLVNASQTILHPLFAKGEEFAEVELK
LLADSARAKMTSQLTLELERLEALKAVNPNIRDEELEHIREQMNELNGYLDGCLLQLDAI
RLVLVSHA
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgcccttttccttaggtcaacgctggataagtgataccgaatctgaacttggtttaggt
acagtagtcgcactggaaggccgtatggtcaccctgatgtttccggcaacggatgagaat
agattgttctcacgcaccgatgctcccttaactcgtgttatttttaatccgggcgataaa
gccgaaagccacgaaggctggagcctgaccgttagtgaagtcgaggagaaagataacctc
attatctatcatggtattcatagcgaaaccggtgagcaggccagtctgagagagaccttg
cttaaccataatattcgtttcaataaaccacaagatagactctttgccggacaaattgat
cgcctcgaacgtttcggcgtccgctatcaatgccagttattaagacacaagttagcaacc
tccgatcttcttggcttacagggcccaagagtcggtctgatccctcatcagcagtggatt
gcccatgaagtcggacgccgttttgccccccgggtattactggccgatgaggtgggactg
ggtaagacgattgaagcgggtctgattattcatcagcaactgcttaccggtcgcgccgaa
cgtattctggttatcgtacccgatacactacgccatcaatggctggtcgaaatgctgcgt
aggtttaacctcaaattctcagtcttcgatgaagatagatgcatcgaagcctatgccgat
aatgataaccctttctataccgaacaactggttatctgttcactcgaacttctgcgtaag
aaaaaacgcttagagcaagccttggatgccgactgggatctgatggtcgtcgatgaagct
catcacctggagtggaccgaagatgcgcctagccgtgcatatcgtgtcgtagaagcactc
agtgaagtcgtccccggcgttctcttgttgacagcgaccccggatcaattgggccatcag
agtcactttgcccgtttacgtctgctggatccggatcgtttctacgactatgaggcgttc
cttaaagaggagagcagctataaagatgttgccagtgccgccgacgccctggccagcgga
aataagctacccgacgatgctatcaatagccttacagagttactgtctgaaaaagatatc
acacctagcattaacgtgattcaggcgacagatatcgatcccgatcaacagcaagatgcc
cgcgatgaacttttgcaggagctactggacagacacggtaccggccgcgtcctgtaccgt
aacagtcgtgcctcggtaaaaggcttcccgacccgtatcttcaatgcgtatcctcaggcg
atgccatctcaatatgtcactgccgcgcgcgtcggtgccatgatgaatggccatctcgat
actcaaggtaaagttaagcaagcactgagtcccgaaaaaatctatcaggattttgacagc
aacagcgccagttggtggaagttcgaccccagagtcgactggctcatcaatttcttaaaa
gaaaaccgcagaaagaaagtgctgatcattgctagtcaggcagaaacagcgctcagcctc
gaagaggcattgcgtacacgtgaaggtattcagacgaccgtattccatgaaggtatgtct
atcattgaacgcgataaagcgggagcctactttgcccaagaaacgggtggtgctcaggct
cttatctgtagcgaaattggttcggaaggtcgtaacttccagttcgccagccagcttatc
ctgttcgatctgccacttaaccctgatctgctcgagcaacgtatcggccgtctggaccgt
atcggtcagaacaatgatgtcgagatccacgtaccttacctcgaaaaaacggctcaagag
tgcttgatgcagtggtaccacaaaggactcaacgcgtttgaacagacttgtccgagtgga
catattctcttcagtgagtttgcagagcccttgttagatgtgctgattaatcaaaatgat
gactcgctcaccgagctgcttaaccatacccaaactcgatacaaagagttgaaaactgtg
atggagcaaggtcgggacaagctacttgagattaactcacatggtggcgaacgggctaat
aagttagtacagagcctggccgctcgtgatgaagatactcagcttatcggctcagttata
cgcttatgggatgttatcggtgtcgagcaggaggactgtggtgaaaacgctatcgtcttg
aatccgagtgaacacatgatgttcccaacctatccgggtcttcccgaagatggcatcaca
gtcaccttcgacagagagatggcattgtcgcgagacgatattgcgcttatcactcaagag
cacccgatagtgcagacaggactggatctgatcacttcatctgagacgggtaccaccagt
gttgccgtgttaaagaacaaggcattaccggctggaaccatcttccttgagctgatctac
atggccgatgcttcggcgcctaagtccagccagttataccgttacctgccgccaacgccg
gtacgtatcttactggataagaatggtaataacctgtctgacaatgtgacctatgagagc
tttaacaagcagctcagtgcggttaaccgtcatatagccagcaagttagtcaatgcgtcg
cagacgattttacatcctctgttcgccaagggcgaagagtttgccgaagttgaactaaag
ctcttagccgatagtgccagagccaagatgacctctcagctcacattggagttagagcgt
ctcgaagcccttaaagcggtgaacccaaacatccgtgatgaggagcttgagcatatccgt
gagcagatgaatgagctcaatggatacctcgatggctgtctgctgcaactcgatgcgatt
cgcttagttcttgtaagtcacgcttaa
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