Shewanella sediminis: Ssed_0642
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Entry
Ssed_0642 CDS
T00596
Name
(GenBank) chaperonin GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
sse
Shewanella sediminis
Pathway
sse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ssed_0642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sse03019
]
Ssed_0642
03110 Chaperones and folding catalysts [BR:
sse03110
]
Ssed_0642
03029 Mitochondrial biogenesis [BR:
sse03029
]
Ssed_0642
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sse04147
]
Ssed_0642
Enzymes [BR:
sse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
Ssed_0642
Messenger RNA biogenesis [BR:
sse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Ssed_0642
Chaperones and folding catalysts [BR:
sse03110
]
Heat shock proteins
HSP60 / Chaperonin
Ssed_0642
Mitochondrial biogenesis [BR:
sse03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
Ssed_0642
Exosome [BR:
sse04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Ssed_0642
Exosomal proteins of other body fluids (saliva and urine)
Ssed_0642
Exosomal proteins of breast cancer cells
Ssed_0642
Exosomal proteins of colorectal cancer cells
Ssed_0642
Exosomal proteins of bladder cancer cells
Ssed_0642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
ABV35254
UniProt:
A8FQY1
LinkDB
All DBs
Position
778963..780612
Genome browser
AA seq
549 aa
AA seq
DB search
MAAKEVLFGNDARVKMLAGVNVLANAVKVTLGPKGRNVVLDKSFGAPLITKDGVSVAKEI
ELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIVTEGLKAVAAGMNPMDLKRGI
DKAVIAAVAELKTLSQECADTNAIAQVGTISANSDETIGEIIATAMEKVGKEGVITVEEG
QALENELDVVEGMQFDRGYLSPYFINKPETGSVELESPFILLVDKKVSNIRELLPILEGL
AKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTV
IAEEIGLELEKATLEDLGTAKRVIITKDDTTIIDGTGEQDQIKARVAQIKIQAEESTSDY
DKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALV
RVASKIAEVEVINEDQKHGVVIALRAMEAPLRQIAANAGEEGSVVANNVKNGSGNYGYNA
GNDTYGDMLEMGILDPTKVTRSALQFAASIAGLMITTEAMVGEVKEDAPAGDMGGMGGMG
GMGGMGGMM
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggcagctaaagaagtattatttggtaacgatgcacgcgtaaaaatgcttgcaggcgtt
aacgtactggcaaacgcggttaaagtaactttaggcccaaagggtcgtaacgtagtactg
gacaagagcttcggtgctccgcttatcactaaagatggtgtgtcagtggccaaagagatc
gaacttgaagacaagtttgaaaacatgggcgcacagatggttaaagaagttgcttctaaa
gccaatgatgcagccggtgacggtacgactaccgctaccgttcttgcacaatctatcgtt
actgaaggtcttaaagccgttgccgctggcatgaacccaatggatcttaaacgcggtatc
gataaggcagttattgctgctgttgccgagctaaagacactttctcaagagtgtgcagac
actaacgctatcgctcaggttggtactatttcggctaactctgatgaaactatcggtgaa
atcatcgcaacagcgatggaaaaagtcggtaaagagggtgtgatcaccgttgaagaaggt
caggcactggaaaacgagctggatgtagttgaaggtatgcagtttgaccgcggttacctc
tctccatacttcatcaacaagccagaaaccggcagtgttgaactggaaagcccgttcatc
ctgcttgttgacaagaaagtatcaaacatccgtgaactactacctatccttgaaggtctg
gctaaaaccggtaagccactgcttatcgttgccgaagacgttgaaggcgaagcactagcg
acattggttgtgaacaacatgcgtggcatcgttaaagttgctgcggttaaagctccaggt
ttcggtgaccgtcgtaaggctatgctacaagatatcgccatcttgaccggcggtactgtt
atcgccgaagagattggtcttgagcttgagaaagcgacactggaagacttaggtacagct
aagcgcgttatcatcactaaagatgacaccactatcatcgacggtaccggtgagcaagat
cagatcaaagcacgtgttgcacagatcaagatccaggctgaagaatcaacgtcagattat
gacaaagagaagcttcaagagcgtatggctaaacttgctggcggcgtagctgttatcaag
gttggcgcagccacagaagttgagatgaaagagaagaaagctcgcgtagaagatgcacta
cacgcgacccgcgccgctgttgaagagggtgtggtagccggtggtggtgttgctctggta
cgtgttgccagcaaaatcgccgaagttgaagtgatcaacgaagaccagaagcacggtgtg
gttatcgcactacgcgctatggaagcaccacttcgtcaaatcgcagctaacgcgggtgaa
gagggttcagttgttgctaacaacgtgaagaacggctctggtaactacggttacaacgcg
ggtaacgatacatacggtgacatgcttgagatgggtatccttgacccaactaaggtaacc
cgtagcgcgctacagttcgcagcgtctatcgctggtcttatgatcacaaccgaagcaatg
gttggcgaagtgaaagaagatgctcctgctggtgatatgggcggcatgggtggaatgggt
ggtatgggcggtatgggcggcatgatgtga
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