Shewanella sediminis: Ssed_0723
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Entry
Ssed_0723 CDS
T00596
Name
(GenBank) uncharacterized P-loop ATPase protein UPF0042
KO
K06958
RNase adapter protein RapZ
Organism
sse
Shewanella sediminis
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sse03019
]
Ssed_0723
Messenger RNA biogenesis [BR:
sse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Ssed_0723
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PapZ_C
RapZ-like_N
Integrase_1
AAA_16
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
ABV35334
UniProt:
A8FR61
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All DBs
Position
complement(868806..869654)
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AA seq
282 aa
AA seq
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MKLVMVSGRSGSGKSVALRVLEDLGYYCVDNLPLPLMDSLLDQLKGSTELVAISVDVRNM
PEQEKELEKQLSNLPADTELLSFFLNSSDEVLLKRYSETRRLHPLSRSKTSLKEAIEHER
ILLEPVSKLVDHYIDTSNLNIYDLSNQVREILLGTVDKELVINFESFGFKYGMPAEADFM
FDVRFLPNPHWEPELRPMTGLDEPVQLFLSQQPMVNKFIWQIENLLETWLPHLERNNRSY
LTIAIGCTGGQHRSVYVTDQLAKLFSNSKHMVKARHRELNNA
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
atgaaactggttatggtatccggtcggtccggatcaggaaaatctgtcgccctcagggtt
ttagaggaccttggatactattgtgtcgataacttgcctctaccgctcatggactcacta
ctcgatcaacttaagggtagtaccgaacttgtcgccatcagtgtcgacgttcgtaacatg
cctgagcaggaaaaagagctcgaaaaacaactttccaacctgcctgcagatactgaatta
ctcagtttctttctcaactcttcagatgaagttctgctgaagcgatacagcgaaacccgc
cgactccatccactatcgagaagtaaaacttctttgaaagaagcgattgagcatgaaagg
atactactcgagccggtttctaagctggtcgatcactacatagatacttcaaacctcaat
atctatgacctgagtaatcaggtacgagagatcttattgggaactgtagataaagaactc
gtcattaattttgaatctttcggcttcaaatacggcatgcccgcagaagccgactttatg
ttcgatgttcgttttctccccaaccctcattgggagccagagctaagacccatgacaggc
ctcgatgaacctgtacagctgtttctcagccagcagcctatggttaataaattcatctgg
caaattgaaaacctgttagaaacgtggctgccgcaccttgaaagaaataatcgtagctat
ctgactatcgccataggctgtaccggcggacaacatagatctgtctatgtcaccgaccaa
ttagcgaaactatttagcaatagcaaacatatggttaaagcccgccatcgtgaactgaac
aatgcctaa
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