Shewanella sediminis: Ssed_0752
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Entry
Ssed_0752 CDS
T00596
Name
(GenBank) Exoribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sse
Shewanella sediminis
Pathway
sse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ssed_0752
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sse03019
]
Ssed_0752
03016 Transfer RNA biogenesis [BR:
sse03016
]
Ssed_0752
Enzymes [BR:
sse01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Ssed_0752
Messenger RNA biogenesis [BR:
sse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Ssed_0752
Transfer RNA biogenesis [BR:
sse03016
]
Prokaryotic type
tRNA degradation factors
Ssed_0752
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
ABV35363
UniProt:
A8FR90
LinkDB
All DBs
Position
894661..897162
Genome browser
AA seq
833 aa
AA seq
DB search
MIKDPHLKREQENYENPIPSREFILEYLRSETSPLNRERIATALKIEGEEQLEALRRRLR
AMERDGQLVFTRGQAYGLPERMDLLTGTIIGHKDGFGFLKLEEGGDDLFINNRDMQMYFH
GDKVLAQKAGVDRKGRREARLVRLVEQRTAALVGRFHLDSGMAFVIADDRRITQEILIPD
EDRNGARQGDIVVLELTRRPGRYVKAAGKVTEVLGQQMAPGMEIEIALRNYDLPHTWSGL
IEKKLRAIPDEVTEADKEARVDLRGLPLVTIDGEDARDFDDAVYAEKKKSGGWRLWVAIA
DVSHYVRTESALDREARSRGNSVYFPSQVIPMLPEKISNGLCSLMPEVDRLCMVAEMTIS
AAGKLSGYKFYPAVMHSHARLTYTQVADMLEGGEVSDKLKPIFPHLQTLQSLYLTLDETR
AERGAIAFETTETQFVFNDDRKIDSIVPRNRNQAHKIIEECMILANVASAKFVKKHKGEV
LYRVHESPSEQKLTNFKDFLKERGLTMEGGLEPTPKDYQAIMEKIADRPDAELIQVMLLR
SMRQATYTPDNEGHFGLALEAYSHFTSPIRRYPDLILHRVIRYLLAKEKGEAKEKWTPCG
GYNYQIEELDLLGEECSTTERRADEATRDVSDWLKCEFMQDHVGDTFEAVIASVTHFGMF
VRLDKLFIDGLVHISSLGSDYYQYDNMRQRLVGEASGQVYQLGDAVTVKVAGVNLDDRQI
DLMMAGEEGKSKRPSRGKKPMTARERVNAEGAKLAKGDKSDKPKRRGSRSKAGKGKASGE
KSLGSGKTSTSGGAKKSGAKTATAAKKSKAKKSSAKKSSAKRKVKASNRDSNR
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaagatccgcatttgaagcgtgaacaagaaaattatgaaaaccccattcctagc
cgcgagtttattttagagtacttgcgatctgaaacatcacctctgaaccgtgaacgtata
gccacagctctgaagatcgaaggtgaagagcagcttgaagcactcaggcgtcgcctgcgt
gccatggagcgtgacggtcagttagtctttacccgtggtcaagcctatggtttaccagag
agaatggacctgttaacaggaacgattattgggcataaagatggttttggcttcctgaag
cttgaggagggcggtgacgacctctttattaataaccgtgacatgcagatgtattttcac
ggcgataaggtactggcacaaaaagctggtgtcgatcgcaaaggccgccgtgaagccaga
ctcgttcgtttagtcgagcagagaactgccgctctcgtgggccgtttccatctggattca
ggtatggcttttgttatcgccgatgacagaagaataacccaagagatcctaattcctgac
gaagatcgcaatggtgcccgtcaaggcgatattgtggtgttagagctcactcgtcgacca
ggccgatatgttaaagcggcaggtaaagtaaccgaggtgctgggtcagcagatggcaccg
ggaatggagatcgagattgccctgcgtaactacgatctaccccatacctggtcgggattg
attgagaaaaaattgcgtgcgattcccgatgaagtgactgaggcagacaaagaggcgcga
gtcgatctcagaggtttgccgctggttactatcgatggcgaagatgcccgcgatttcgat
gacgctgtatatgctgaaaagaaaaagagtggtggctggcgcttatgggtcgctatcgcc
gatgttagccattacgtgcgcactgaatctgcactggacagagaggcacgtagccgaggt
aactcagtctattttccatcgcaagtgatccctatgctgccggagaagatctcaaacgga
ttatgctctttgatgcctgaggtcgatcgtctgtgtatggtcgctgagatgacgatctct
gctgctggtaaattatcgggttacaagttctaccctgccgtgatgcactctcatgctcgt
ctgacttatacccaagtggccgatatgctcgaaggtggagaggtgagtgataagctcaaa
cctattttcccacaccttcagacgctgcagtctctgtacctgactctagacgagactcgc
gccgaacgcggtgctatcgcatttgaaactactgagactcagttcgttttcaatgatgac
aggaagattgacagcatagtgccacgcaatcgcaatcaggcgcataagatcattgaagaa
tgcatgatcttagccaacgttgcctcggctaagtttgtgaaaaagcacaaaggtgaagtg
ctttatcgcgtacatgagtcaccatctgagcagaagttaactaacttcaaagacttcttg
aaagagcgtggtttaaccatggaaggcgggcttgagcctacgcctaaagattatcaggcc
atcatggagaagattgccgatagacccgatgccgaactgattcaggtgatgttgttacgc
tctatgcgtcaggcaacatacaccccggataacgaagggcactttggtttagccctggag
gcatattcgcattttacttcgcctattcgtcgctacccggatctgatcctgcatcgcgtc
attcgttatctgttagcgaaggagaaaggtgaggcgaaagagaagtggacgccctgtggt
ggttacaattatcaaattgaagagctcgacctgctaggtgaagagtgttcgaccacagag
cgccgagccgatgaagcgacgcgtgacgtgagtgactggctcaagtgtgaatttatgcag
gaccatgtcggtgatacgttcgaggctgtaattgcctccgtgacccacttcggcatgttt
gttcgtttagataaactgtttatcgatggtctggttcatatctccagtctgggtagcgat
tactatcaatatgataatatgcgccaacgcctggtcggtgaagcctcgggtcaagtctat
caacttggtgatgcggtaacggttaaggtcgccggtgttaatcttgatgatcgtcagatc
gatctgatgatggcgggtgaggaaggtaagtctaaacgtccaagccgtggcaagaagccg
atgacagcccgtgagagagtgaatgccgaaggcgccaaattggccaagggtgataagagc
gacaagcctaaacgacgcggttctcgctcaaaagccggtaagggtaaagcttctggtgaa
aagagcctaggttctggtaaaacgagtacaagtggtggagctaagaagtccggcgctaaa
acagcaacggcagctaagaagtcgaaggctaaaaagtcttcagcaaaaaagagctcggcc
aagcgtaaagtcaaagcaagcaatagagacagtaatagatga
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