Shewanella sediminis: Ssed_0786
Help
Entry
Ssed_0786 CDS
T00596
Name
(GenBank) MscS mechanosensitive ion channel
KO
K22051
miniconductance mechanosensitive channel
Organism
sse
Shewanella sediminis
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sse02000
]
Ssed_0786
Transporters [BR:
sse02000
]
Other transporters
Pores ion channels [TC:
1
]
Ssed_0786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MscS_TM
MS_channel_2nd
MS_channel_3rd
MS_channel_1st
MscS_porin
Motif
Other DBs
NCBI-ProteinID:
ABV35397
UniProt:
A8FRC4
LinkDB
All DBs
Position
complement(930763..933963)
Genome browser
AA seq
1066 aa
AA seq
DB search
MRLILLLLVFTLIPFANASSPLGLDKRLGINQTTVKNLSVEEKLAHLTRATEEQKLLEQS
YQETIDNYQTHKLSIEHQLIQAQPPLSLSQNQGLTQQASLAYLRLSELKETEANLNGKIT
DLIKQHNQLPNKISSARQILSHSKKQTISQPPSGEELVLQAQRQLYVQTLATLEAELASS
QKRIDLNQKQVLLVRKQLSQQENLIESLNSAVALQRQKRTDATIAKSLIETSTDKDPLTQ
ELSSINQNYASDLKSLTNKTNQVVKQQEVAENRYQQQAKQLANIQQQIGWIKLNSAFGER
FLQMLQTLPNPPNQEKLQNKIANARMARYQLEQDQTLNGQQLIAQDSFTSIQNKLLDSQH
ALITQLLQSYDLYLSELGDLRVIYEQLTQQHLTLKSTLNEHLFWVPNANSIGQLWFTEFY
QSTQWLIHQAPSIDLSNSFSERSGFWSWWIILFVLSLVAQDILTPKFKAAMAQDVTFVGN
VTQDQFVYTYRALINSLAYSIIKPLPVITAGLIMYDSSQNMVSAIGMGVLAIGLLYLLYR
FTYLLALDRGLLISHFKGEKEIIREGQLRFKTFTLMAIPFFGIMGFTEFIDNSVLRNSIG
RGAFIIFCIMLLWFYKDILALSKREHHYHQDGKNKKLIQRILWTILLVVPPMCAVLAFRG
YYYTAFQMLLQLQLSLLLSLGFMLLYQLIKRWMLIERRRIAFDRAKARRAEILSQRERGE
DPQNTNDALDTYEEPVVDLETISSQSLGLVRSLLLLAFLVCLIGLWTQTHTALFSLLDGI
TLWTSNSMINGIEQQLPITLKSLLLGLIIVGFSLMIATNLPGLLELMILQRLDLTQGTGF
AITTVSRYLVVFFGLLSGFSTLGMEWSKLQWLVAALSVGLGFGLQEIFANFISGLIILFE
KPVRIGDTVTIRDLTGTVSKIQIRATTIIDWDRKEIIVPNKAFITEQLINWSLSDPITRV
IVYVSVARDSDPARVEAALYQAVKECDDALETPEPEVWFAGFGKHTQDFEVRAYAKDMNS
RWPLRHKLHKRISKKLNENNLELAYPQLEVHINNSQNKDAQGLIRT
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgcgactaattttactgctcttagtattcaccttaatcccctttgccaatgccagttca
cctcttgggcttgataaacgtctggggataaatcaaaccacagttaaaaatctttcggtt
gaagaaaaacttgcacatttaacacgtgcgaccgaagagcagaagttgcttgaacagagc
tatcaagagacgattgataactatcagactcataagctcagtattgaacatcaacttatt
caagctcaaccccctctctctttgtcacaaaatcagggattaactcaacaagcctctctc
gcttatctgaggctctcggagttaaaagagacagaagccaacctcaatgggaaaataacg
gacttaattaagcagcataaccagttgccgaacaagataagttcggccagacaaattctc
tcgcatagcaagaaacaaactattagtcaaccacctagcggagaggaacttgtacttcag
gcacaacgtcagctctatgttcaaaccttagcgacactcgaagcagaacttgccagcagt
caaaaacgcatagacctcaatcagaaacaggtgttactggtaagaaaacagctatcccaa
caggaaaacctgattgaatcgctcaatagcgctgtggccctgcaacgccaaaaaagaacc
gatgctacaatcgctaagagtctgattgaaacctcgacggacaaagaccctctcacacaa
gagctaagctcaataaatcaaaactacgcctcagatttaaagagtctgacaaacaaaacc
aaccaagtggtaaagcagcaagaggtggctgaaaacagatatcaacagcaagccaagcag
ctggccaatattcaacaacagataggatggattaagctcaactcggcttttggcgaacgc
tttctgcagatgctgcaaacattaccgaatccgccaaaccaggaaaaactacaaaacaaa
attgccaatgcaagaatggcgagatatcaactcgaacaagatcaaaccctcaacggacag
cagctaatagctcaagattcattcacaagcatacagaataaattactcgactctcagcat
gcgttaatcactcagctattacagagctatgatctatacctgagtgaactgggtgactta
agagtcatctacgagcagttaacccaacagcatttaaccttaaaaagtaccctgaacgaa
cacctgttttgggttccaaatgcaaactctatcgggcaactctggttcaccgagttctac
cagagcacacaatggctgattcatcaggctccctccatcgatctatcaaactccttcagt
gagcgaagtggtttctggtcctggtggattatactctttgttctcagtcttgtggcccag
gatattctgacacctaagtttaaagccgccatggcccaggatgtaacgttcgtagggaat
gttacccaagatcaatttgtttatacctacagagcccttatcaattcgctggcgtacagc
atcatcaagccactgcccgtcatcaccgcgggcttaatcatgtacgactccagccaaaat
atggtttcagccataggcatgggcgtactcgccattgggctactctacctgctctatcgt
tttacttacctgctggcactcgatcgcggcctgttgatcagccacttcaagggggaaaaa
gagatcatccgcgagggtcagctcaggtttaagacattcacattaatggccattcctttc
ttcggcatcatggggtttactgagttcatcgataactctgtgttacgaaacagcatagga
agaggcgcatttattatcttctgtatcatgttgctttggttctacaaagatattctggca
ctgtcgaagagagaacatcattaccatcaggatggtaaaaataagaagcttattcaacgt
atcttatggaccattcttctagtcgttccccccatgtgtgcggtgcttgcattcagaggt
tactactacaccgcctttcagatgctattacagttgcagttatccctgctgctctcatta
gggtttatgctgctctatcagttgataaagcgctggatgttgattgagcgacgcagaata
gccttcgatcgggcaaaagcccgaagagccgagatcctctcgcaacgtgaacggggtgaa
gaccctcaaaacaccaatgacgctctcgatacgtatgaagagcccgtggtcgacttagaa
actatctccagccagtctctgggcttagtgcgctcattgctgctgctggcctttctcgtc
tgtttaatcggcctgtggacccagactcacacggctctgttctctctgctcgacgggatc
acactctggaccagtaattcaatgataaatggcattgaacagcagctgccaatcacatta
aagtcactgctgttagggcttatcattgtcggcttctcactgatgatagccaccaactta
cctggcctgctcgaactaatgatattgcaacggctcgatctaacccaaggcaccggtttt
gcgataaccacagtcagtcgctacctggtggttttcttcggtctgctcagcggtttctcg
acccttgggatggagtggtcaaaattacaatggctcgtcgccgctctatcggttggttta
ggtttcggcctgcaggagatcttcgctaactttatctccggtttgattattctttttgaa
aaaccggttcgtatcggcgacaccgtcaccatcagagatctgacaggaacggtgagtaaa
attcaaattcgagccacgaccattattgactgggacagaaaagagattatcgttcctaac
aaagcatttataaccgagcagctaatcaactggtcgctatcggatccgatcacccgtgtc
atagtgtacgtttcagttgcaagagactcagatccggctcgtgtcgaagccgcattgtat
caagcggtaaaggagtgtgatgacgccttggagacaccagaacctgaggtctggtttgcc
ggttttggcaaacacactcaagacttcgaagtcagagcatacgcaaaagatatgaactca
cgttggccgctgcgtcataagttacataaacggatcagtaaaaagttaaatgaaaacaac
ctggaactggcttatccgcaactggaagtacatattaacaatagccaaaacaaagatgct
caaggacttatcagaacctaa
DBGET
integrated database retrieval system
