Shewanella sediminis: Ssed_0838
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Entry
Ssed_0838 CDS
T00596
Name
(GenBank) formate dehydrogenase, alpha subunit
KO
K00123
formate dehydrogenase major subunit [EC:
1.17.1.9
]
Organism
sse
Shewanella sediminis
Pathway
sse00630
Glyoxylate and dicarboxylate metabolism
sse00680
Methane metabolism
sse01100
Metabolic pathways
sse01120
Microbial metabolism in diverse environments
sse01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
Ssed_0838
09102 Energy metabolism
00680 Methane metabolism
Ssed_0838
Enzymes [BR:
sse01000
]
1. Oxidoreductases
1.17 Acting on CH or CH2 groups
1.17.1 With NAD+ or NADP+ as acceptor
1.17.1.9 formate dehydrogenase
Ssed_0838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Molybdopterin
Molydop_binding
Pyr_redox_2
Fer4_20
Molybdop_Fe4S4
Pyr_redox
NAD_binding_8
Fer4_7
Pyr_redox_3
Fer4
DAO
Fer4_6
FAD_oxidored
HI0933_like
Fer2_4
Fer4_8
Fer4_18
Fer4_9
Fer4_2
FAD_binding_2
Amino_oxidase
GIDA
NAD_binding_7
Thi4
FAD_binding_3
Fer4_10
AlaDh_PNT_C
Lys_Orn_oxgnase
Fer4_15
Fer4_16
Fer4_21
NADH-G_4Fe-4S_3
ApbA
Motif
Other DBs
NCBI-ProteinID:
ABV35449
UniProt:
A8FRH6
LinkDB
All DBs
Position
complement(994387..998709)
Genome browser
AA seq
1440 aa
AA seq
DB search
MKKLKIDGTLLSAHPEELLIDIARDAGIAIPSLCERPGTGKHKSGSEEKSHCNLCVVEIH
SQETTTEEEANPSTVRSCETTLGELCASAATDMSAGSETQIEVVTQSAYLSQQRQASLTE
ILSDHFADCEAPCQQACPAGVDVQSYLFHIAQGNHKEAVKVIKQTLPLPLSIGRVCPAFC
ETECRRGLVDEPVAIRQLKRHAADLDIEDSESYVPPKSPATGKKVAIIGSGPAGITAGYY
LSNSGHDVTIYESMPKAGGWLRYGIPEYRLPKAILDKEIDLLCKNGLNIQTNIRLGEQIH
LKQLVDDFDAVCLAIGAQKAVPMNYPGIDLEGCYLGVDYLKDHCTEKRYRTGDKVAVIGG
GNTAIDCARTAKRDGADVTLIYRRTRDEMPAEPFEIEEAEHEGINFHFLTNPIENHSDLH
GRVESVTLEKMALGEPDATGRRAPIATGEHFTQAFDTVIPAVSQMPDMEFLKHPESQLTT
GKLALTRWNTFEGCDHTMSAGLSSGIDKLFVLGDSRTGPATAVAAVADGRKAAQAIEKLL
TQGLACELSPKQFNATKSGDNTELSSALYPDIKQRPKAKMLELGLQERSFNFNEIELGFE
PDQAMQEAARCLECACQANTDCKLRDYATEYKVDSTSLTNSEPADAPRQFSIDTSSPFIT
FDANRCISCGACVEVCQGQDGHNAISFAPDNYQALPTEIAVQQCKRAPRAGFSASMNDSD
CVQCGSCVQVCPTGALVDARDKTQGVRIELKQVSTICTYCGIGCRLNMHVDETENKIKRI
TGDTRSVVNEGMLCVKGRFGFDFISSEQRLTHPLIRKEGKLVRASWSEAFDYIGSKLSPI
IEKHGGNALAGLASAKATNEDNYLFQKLFRSVIGTNNIDHCARLCHASTVTALYDSLGSG
AMSNDIPGIKESDLIFILGSDTSNAHPIIASRIKTAIRDHGARLIVADPKRVDIADHARL
YVKQRPGTDIMLLNAIMQQIITNNWHDQAYIQDRVDGFSALYDEVMKPDYNLGNAELITG
VDAADIVAIAQMIGTAEKTAVYYAMGITQHTSGHDNVTAISNLQLLCGNIGVRGAGINPL
RGQSNVQGACDMGALPNYFSGYQRVDDPLVQRQFRQAWNNQELPNREGIAATEMMLSILK
GDLRALYIMGENPVLSDPDQTHVLEALQAVEFMIVQDIFLTETAELADVVLPALTFAEKT
GHFTNTERRVQQLQVAVKAPGIAMDDWQIVQQVANRLGADWHYEDEKAIWHEITQVTPQY
RGISWDSVDINTEHGIKGVQWPCPTQNHPGTPVLHTSQFTRGRAQMRPVSHTLPPEMPCS
EYPLILSTGRLLEQFHTGTLTRKTAGLDELGAPKVMISVYDAEILGINNGDMLTISSRRG
EIEIAAFVTKRAQAGVLFLPFHFAEAAANKLTINALDPIAKIPSFKICAIKAEKLEPAMG
NT seq
4323 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagctgaaaatcgatggtaccttgctatcggctcatcccgaagaactcctgatt
gacatagcaagagatgcggggatagcgatccccagtctttgcgagcggccaggcacgggt
aaacacaagagtggcagtgaagagaaaagccactgcaacctctgtgtagttgagatccat
tctcaagagacgactacagaggaggaggccaatccctcaaccgtaaggtcctgtgaaacg
acattgggtgagctttgtgccagtgccgcaaccgacatgagcgcaggcagcgaaactcag
attgaagttgtcactcaatcggcctaccttagccagcagcgacaagcctcgttgacagaa
atattaagtgaccactttgcagactgtgaggccccctgccaacaagcctgcccggcaggc
gtcgatgtacagtcatacctgtttcatatcgcacaaggcaaccataaagaagccgtaaag
gtgattaagcagaccctgccactccctctgtctatcggcagagtatgccccgcattttgt
gaaaccgagtgcagacgaggcctggttgatgagcctgtagcaataagacagctcaagcga
catgctgcagacctggatatcgaagacagcgagagctatgtgccacctaagtctccggca
acagggaaaaaagtcgccattataggcagtggacccgcaggtataacggccggatattat
ctgtccaattcgggacacgatgtcaccatctatgagtcaatgccaaaagccggcggctgg
ttacgctacggaattcctgaataccgtctccctaaggcgatactcgataaagagatcgac
ctgctgtgtaaaaacggtttaaacatccagactaacatcaggctgggtgagcagatccac
cttaagcagcttgtcgatgatttcgatgcagtatgcttagccataggcgcacaaaaagca
gtaccgatgaactatccgggtatcgatcttgaaggttgttacttaggtgtcgactatcta
aaagatcactgcacagaaaagcgctacaggacaggagataaggtggccgtgatcggaggg
ggaaacaccgccatagattgcgcgcgaaccgcaaagcgtgacggagccgatgtgaccctc
atctatcgtcgcacccgtgacgagatgcctgccgagccttttgagatcgaggaagccgaa
cacgaagggattaatttccatttcctgacaaaccccatagagaatcacagtgatctccat
ggaagagtagagagtgtcaccctggaaaaaatggcattaggggaacccgatgcgacagga
agaagggctcccatcgctaccggagagcattttacccaagccttcgataccgttattcca
gccgtttcacagatgccggatatggagtttcttaaacacccggaaagtcagctcaccaca
gggaagctggctcttacccgctggaatacattcgaaggttgcgatcatactatgtcggcg
ggcctgtcatcaggcatcgataaactctttgtattaggtgattccagaacgggaccggct
acggccgtcgcagcggtggccgacggcagaaaagccgctcaggctatcgaaaagttgctg
acacaaggtctggcctgtgagcttagcccgaagcagttcaatgccactaaatccggtgac
aacactgagttgtcgtcggcactttatcctgatataaagcaacgacctaaggccaagatg
ttagagctcggcctgcaagagagaagctttaatttcaatgaaattgaactcggcttcgag
cccgatcaggcgatgcaagaggcagcccgatgtcttgagtgtgcatgccaggccaatacc
gactgtaagctgcgcgactatgcgaccgaatacaaggttgattccacctccctcaccaat
agtgaaccggcggacgcaccgagacaattcagtatcgataccagcagccctttcattacc
ttcgatgctaaccgctgcatcagctgtggtgcctgtgtggaagtttgtcagggtcaggat
ggccataatgccatcagctttgcgcccgataactatcaggctctgccaaccgaaattgca
gtccaacagtgtaaacgcgcccctcgtgcaggctttagcgcttcgatgaatgacagtgat
tgtgtgcagtgtggtagctgcgttcaagtctgcccaactggagccctggtcgatgcgcgg
gataaaactcagggagtaaggattgagctgaagcaggtatcgaccatctgtacctactgc
ggtataggttgcaggcttaatatgcatgtcgatgaaaccgaaaataaaattaagcggatc
accggcgatacccgctcagtcgtcaatgaggggatgttatgtgtcaagggccgcttcggt
tttgactttatctccagtgaacagaggctgactcatccgctcattcgaaaagagggaaag
ctggttcgagcttcctggagtgaagctttcgattatatcggcagtaaactcagtcccatt
atcgaaaaacatggcggtaatgcgctggccggactcgcctcggccaaagcgacaaatgaa
gataactatctatttcaaaagctattcagaagcgttatcggcacgaataatatcgaccac
tgtgccagattgtgtcatgcatcgaccgttaccgccctctatgacagcttaggcagcgga
gccatgagcaatgatattccgggcattaaagagtccgatctgatcttcatattaggctcc
gataccagcaacgcccatccaatcatcgcctcacggattaagacggctattcgtgaccat
ggtgccagactaatcgttgccgatcccaagcgagtagatattgccgatcacgctcgcctc
tacgtcaaacagagacccggcactgacatcatgctgctcaatgctatcatgcagcagatc
attaccaataactggcacgatcaggcctatattcaggacagagtcgatggatttagcgcc
ctttacgacgaggtgatgaagccagactataacctaggcaatgcagaacttattaccggc
gttgatgcagcagatattgtcgctatcgcacagatgataggaactgcagagaagacggcg
gtctattacgccatggggatcacccagcatacttcaggccatgacaatgtcaccgcaatt
tccaatctgcagttgctctgcgggaacataggtgttcgtggcgcaggcattaacccactg
cgaggtcagagtaatgttcagggagcatgtgacatgggcgcgctaccgaattatttcagc
ggttatcaaagagtcgatgatcctctggtgcagcgtcaattcagacaagcctggaacaat
caggaactccccaaccgggagggcatagcagcaactgagatgatgctttcaattctcaag
ggagatctgagagcactctacattatgggtgagaacccggtactgagcgatcccgatcag
actcatgtactcgaagctttgcaggctgtagagtttatgattgtgcaagatatctttctg
actgagaccgccgagcttgccgatgtggtactcccggccctgacgttcgcagaaaaaaca
ggacacttcaccaataccgagcgccgggtacagcaactgcaagtagcagtaaaagctccg
ggaattgctatggacgactggcagatagtacaacaagttgccaaccgtttaggcgccgac
tggcactatgaagatgagaaagcgatatggcatgagataactcaggttacccctcaatac
cgggggattagttgggactcagtcgacattaacactgaacatggcatcaagggagttcaa
tggccctgcccgacgcagaaccatccaggcactcctgtactgcataccagccaattcacc
cgtggccgggcacaaatgaggcctgtaagccatacgcttcccccggagatgccgtgtagc
gaatatccgcttatcctttcaaccggccgcttactcgagcaatttcacaccggaaccctc
actcgaaagacggcgggactggatgagcttggtgcaccaaaggtgatgatatctgtctat
gacgctgagatattagggattaataatggcgatatgctaacgatctcatctcgccgtggg
gagattgaaatcgcggcctttgtgactaaacgagcccaagcgggagtgttgtttttaccc
ttccactttgcagaagcggcagccaataaactgaccatcaatgcactcgatcctatcgca
aagatcccctcgtttaagatctgtgccatcaaagcggaaaagcttgaaccggcaatgggg
taa
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integrated database retrieval system
