Shewanella sediminis: Ssed_0843
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Entry
Ssed_0843 CDS
T00596
Name
(GenBank) RNA pseudouridine synthase family protein
KO
K06181
23S rRNA pseudouridine2457 synthase [EC:
5.4.99.20
]
Organism
sse
Shewanella sediminis
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sse03009
]
Ssed_0843
Enzymes [BR:
sse01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.20 23S rRNA pseudouridine2457 synthase
Ssed_0843
Ribosome biogenesis [BR:
sse03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Ssed_0843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
DUF5818
Motif
Other DBs
NCBI-ProteinID:
ABV35454
UniProt:
A8FRI1
LinkDB
All DBs
Position
complement(1005697..1006353)
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AA seq
218 aa
AA seq
DB search
MPENKPLPTNNDTSYEFNTECLSIRDASQPHHHYKIFKPYGYLSQFVPERRKSKKLLAEL
ALFPAGTMAIGRLDHDSEGLLLLTTDGMVSHQVRSKKVEKEYYVQVDGDIDDAAILKLQT
GVEIGIKGEKYLTLPCKVFKLENEPELPSNGRKPRDPKHGPMSWVSITIGEGKNRQIRKM
TAAAGFPTLRLVRVRIGNIHLDRMQSGEVILLKNPESI
NT seq
657 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaaataaaccgctaccaacgaataacgatacctcttatgagttcaatactgag
tgtctgtcgataagggatgcttctcaaccccatcaccactataaaattttcaagccctat
ggctacctgagtcaatttgtaccggaaagaagaaagagtaaaaaactgctggcagaacta
gccctattcccagccggcacaatggcaatcggcagactcgatcatgactctgaggggcta
ctgttattgactaccgatggcatggtcagccaccaggttcgcagtaaaaaagtagaaaag
gagtattatgtgcaggttgatggcgacatcgatgacgccgcaatactgaagctacaaacc
ggggtcgagattggcatcaaaggcgaaaaatatctcaccctgccctgcaaagtttttaaa
ctggagaatgaacccgaattaccgtctaatggacgtaagcctcgtgatcctaagcatggg
ccaatgagctgggtatcgatcactataggcgaaggaaaaaaccgtcagataagaaaaatg
acggcggcggctggttttccaactcttaggttggtcagagtgagaattggcaatattcat
ctcgataggatgcagtccggcgaagtcattctactgaaaaaccctgagagtatctga
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