Shewanella sediminis: Ssed_0890
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Entry
Ssed_0890 CDS
T00596
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
sse
Shewanella sediminis
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sse03009
]
Ssed_0890
Enzymes [BR:
sse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ssed_0890
Ribosome biogenesis [BR:
sse03009
]
Prokaryotic type
rRNA helicases
Ssed_0890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_RecD
SNF2-rel_dom
AAA_11
DUF6930
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABV35501
UniProt:
A8FRM8
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All DBs
Position
complement(1061964..1063190)
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AA seq
408 aa
AA seq
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MQFEDLLLDPILLESLKAMGHHKPTTIQQQAIPLAMDQRDILARAPTGTGKTASFLLPAL
QHLIDFPRRFSGQARILILTPTRELASQIHRYASHLASELDFNTVIITGGVPYGPQEDAL
KGNVDILVATPGRLMEYLDKGQFNAEEVEMLVIDEADRMLDMGFSAAVETLAIESVGRKQ
TMLFSATLEGSDVGRFSHQLLTDPVKVEAEAPRSEKAKIHQWIHIADNKDHKFNLLCSIL
QQEETKRAIVFVKTREAVASLEGLLQKAGIPCSFMRGDMEQKQRFQALGRFTKGEVNVLL
ATDVAARGIDVDDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDIRVVGKI
ERYMDQPLKRRFIKDLRPKNKEAKPPGKNKVKPTEKTFSKKNKKKKKK
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttgaagacctcctgcttgaccctattttactagagtcattgaaagccatgggc
catcacaagcctaccaccatacagcaacaagcgatcccattggccatggatcagcgggac
attcttgcgcgtgcaccgacaggtacaggtaaaactgccagcttcctgttgccggcactt
cagcatcttatcgacttcccgagacgcttttcaggtcaggcccgaatcctgatattgact
ccaacacgtgaactcgcgagtcaaatccacagatatgcctctcatctggcttccgaattg
gatttcaataccgtcatcatcacaggcggagtgccttacgggcctcaagaggatgcactg
aaaggtaacgtcgatattctggtggcgacacctggccgcctgatggaatacctcgacaag
ggtcagtttaatgccgaagaggtcgaaatgctggtcatcgatgaagccgacagaatgttg
gatatgggcttctctgccgcagtcgaaaccctagctatcgagtcagtgggccgtaaacag
accatgctgttctcagccacgctagagggcagtgacgtaggccgcttctctcatcaactg
ctgacagacccggtaaaagttgaagccgaagcaccgcgcagtgaaaaggcaaagatacat
cagtggatccatatcgccgacaataaagaccataaattcaatctgttatgtagcatattg
caacaagaagagacaaagcgtgccatcgtcttcgttaagactcgagaagcggtcgctagc
ctggagggtttactgcagaaagccggtattccatgtagctttatgcgtggcgatatggag
cagaagcagcgcttccaagccctcggacgtttcactaaaggtgaagtgaatgtgttattg
gctaccgatgtcgccgcacgtggtatcgatgtcgatgacatcacccatgtgatcaatttc
gatatgcctagatctgccgatacttatgttcaccgtatcggtcgtaccggtcgtgcaggt
gcgaaaggcacggcaatatctttggtcgaagcccatgacattcgcgtcgttggtaagatt
gaacgctacatggatcagccacttaagcgtcgattcatcaaagatctcagacctaaaaat
aaagaagctaagccaccgggaaagaacaaagtaaaaccgactgaaaaaactttcagcaag
aaaaacaaaaaaaagaaaaaaaagtaa
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