Shewanella sediminis: Ssed_0895
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Entry
Ssed_0895 CDS
T00596
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sse
Shewanella sediminis
Pathway
sse03410
Base excision repair
sse03430
Mismatch repair
sse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Ssed_0895
03430 Mismatch repair
Ssed_0895
03440 Homologous recombination
Ssed_0895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sse03400
]
Ssed_0895
DNA repair and recombination proteins [BR:
sse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Ssed_0895
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Ssed_0895
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Ssed_0895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ABV35506
UniProt:
A8FRN3
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All DBs
Position
1068380..1070104
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AA seq
574 aa
AA seq
DB search
MIHKIVRRPKVDDSHLPSTLSPLLKQIYASRGSSAEDCELTLARLLRPDTMKGLAEGAAI
IADAIKAQRSILIMGDFDADGATSTSVCMLALTMMGATKVDYLIPNRFDYGYGLSPEIVA
VAHSKGAELLITVDNGISSIEGVEAAKALGMQVVITDHHLPGKTVPDADAIVNPNQVDCN
FASKSIAGVGVAFYLMSALRAELGKRNWYQEQGLVVPNLGQLLDIVALGTVADVVALDSN
NRILVEAGLQRVRAGRCRAGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALG
VETLLCDDMMTARRMAAELDGLNAERRDLEADMQQEALKSLASVELNEEELPWGIALFQE
DWHQGVIGILASRIKDRYHRPVIAFADAGEGEIKGSARSIKGLHMRDLLELINTRHPGMI
LKFGGHAMAAGLSLKAKDFPAFEQAYDQSVRELLKPELLTGELVTDGELTPDEMKLDIAW
ELRNAGPWGQEFPEPLFDGYFKVIQQRIVGEKHLKLVLETECGQTMLDAIAFNVDLTTWP
DATIKHARVVYKLDVNEFRGNQSLQLMVDQIEAM
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
gtgatccataagattgttcgccgtcctaaggtcgatgatagtcaccttcccagtactctt
tcgccgctcttaaaacagatctacgccagtcgtggtagttcagccgaagattgtgagtta
acactggctcgcttattaagacccgataccatgaaagggcttgccgagggcgcagccatc
attgccgatgctatcaaggcccagcgttcaattctcatcatgggggatttcgatgccgat
ggggcaacctcgaccagcgtctgcatgcttgccctgactatgatgggggccactaaggtc
gattacctcattcctaatcggttcgattatggttatggcttgagccccgagatcgtcgcc
gtcgcccatagcaagggggccgagttattgatcaccgtagataacgggatctcatcgata
gagggcgttgaagcggcaaaagccttaggtatgcaagttgtgatcaccgatcaccatctg
ccgggtaaaacggtgcccgatgccgatgccatcgttaacccgaaccaggtcgattgcaac
ttcgcgagtaagtcgatcgcgggggttggggtggcattttatctgatgtcagccttgaga
gccgaactgggaaagcgtaattggtatcaggagcaaggcctggtggtgcccaatctgggg
caactgctggatatcgtcgccctgggcacggttgccgatgtggtcgccctagacagtaac
aacagaattctggtcgaagcgggcctgcagagagtcagagcgggccgttgccgtgcggga
atcacagcgttactggaggtggccaaacgcaatccggcgcgtattgtcgcatctgatttt
ggtttcgctgtcgggcccaggctcaatgcggcgggtagattggacgagatggcgctaggt
gtcgagaccctgctctgtgacgacatgatgacagcaagaagaatggcggccgagctcgat
ggactcaacgccgagcggcgcgatctggaagccgatatgcagcaggaggcgttaaagagc
ctggcatcggtagagctcaatgaagaggagcttccctgggggattgctctttttcaagag
gactggcatcaaggcgtgataggcattctggcctcgcgcatcaaagacaggtaccacaga
ccagtgattgcctttgccgatgcgggagagggagagataaaaggttcggcccgctcgata
aaagggctgcatatgcgagatctgttagagctgattaatacccgtcacccgggaatgatc
cttaagttcggcggtcacgccatggcggcgggtttgtccctaaaggcgaaagattttccc
gcgtttgagcaggcttacgaccagagtgtcagagagctgttaaaacccgagctgttaacc
ggcgaattagtcaccgatggtgagttgaccccggatgagatgaaactggatatagcgtgg
gagctcagaaatgcaggcccctgggggcaagagttccccgagccgctgttcgatggttat
ttcaaggtgatccagcagcgcattgtgggtgagaaacatcttaagttggtgttggaaacc
gagtgtggccagaccatgctcgatgctatcgccttcaacgtcgatctgaccacctggccg
gatgcaacaatcaaacatgcccgggtggtgtacaagctggatgtgaacgagttcagaggc
aatcagagcctgcagttgatggtggatcagattgaggcaatgtag
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