Shewanella sediminis: Ssed_1082
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Entry
Ssed_1082 CDS
T00596
Name
(GenBank) ErfK/YbiS/YcfS/YnhG family protein
KO
K19235
L,D-transpeptidase YbiS
Organism
sse
Shewanella sediminis
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sse01002
]
Ssed_1082
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sse01011
]
Ssed_1082
Peptidases and inhibitors [BR:
sse01002
]
Cysteine peptidases
Family C82
Ssed_1082
Peptidoglycan biosynthesis and degradation proteins [BR:
sse01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
Ssed_1082
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Ldt_C
LysM
Motif
Other DBs
NCBI-ProteinID:
ABV35693
UniProt:
A8FS70
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Position
1282834..1283835
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AA seq
333 aa
AA seq
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MMRVMMWFILSLIPAVTLANVYPLPEKGSRLIGEVQEHVVAQGDYFQTIAKEYNIGILEL
METNPGVDPFLPTVGSKLVIPTQMLLPDVPRKGIVINLPELRLYYFPTNGKEVHVFPVGI
GRVGRETPEMVTKIKSRIPNPSWTPPASIRRDHLAERGEVLPRVVPAGPDNPLGKYAMQL
SHGDGSYLIHGTNKDFGVGMRVSSGCVRLNPDDIEWLFHQAKYGDSVRVINETVKISSEP
DGSQIIEVHSALSKSESDVEREKVVSMKAGVVKFISQEGIDSFKANDALLTQNGLPVNIR
TMDDSDSITLSSGIESAASSESVTNESEPSASL
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgatgcgagtaatgatgtggttcatcttaagcttaattcctgccgtgaccctggctaat
gtgtatccactgccagagaagggaagccgtcttatcggtgaagtccaggaacatgtggta
gcgcagggcgactattttcaaaccatagcgaaagaatacaatataggtattcttgagttg
atggagacgaacccgggtgtcgatccgtttcttcctactgtgggctcaaagcttgtcatc
ccaactcagatgttgcttcccgatgttcccagaaaagggatagtgattaacctgccagaa
cttcgcctctattattttccgacaaatggtaaagaggtgcatgttttccctgtggggatt
gggcgtgtcggtcgtgaaaccccggagatggtgactaagattaagtcgaggatccctaac
cctagctggacgccaccggcaagtatacgtcgtgaccatctcgcagagcgtggcgaggtg
ctaccgcgcgtcgtgcctgccggacccgacaatccattaggtaaatatgctatgcagctt
tctcatggagacggcagttacctcattcatggtaccaataaagattttggtgtcggcatg
cgtgtgagctccggttgtgtccgtttgaaccctgacgatatcgaatggttgttccatcag
gctaaatacggtgattcggtgagagtgatcaatgaaaccgttaagatctcctctgagcct
gatggcagtcagatcatcgaggtgcattccgctctgtctaaatctgagtcagatgtcgag
cgggagaaggtcgtttcaatgaaggccggagtagtaaaatttatcagccaggaagggatt
gatagctttaaggctaatgatgcgctattgactcaaaacgggttgccggtgaatatccgc
acaatggatgattcagacagtatcacactatcctcgggcattgagtctgcggcaagttct
gaatctgtaacaaatgagagtgagccctcagccagcttatag
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