Shewanella sediminis: Ssed_1148
Help
Entry
Ssed_1148 CDS
T00596
Name
(GenBank) Ribonuclease III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
sse
Shewanella sediminis
Pathway
sse03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Ssed_1148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sse03019
]
Ssed_1148
03009 Ribosome biogenesis [BR:
sse03009
]
Ssed_1148
03036 Chromosome and associated proteins [BR:
sse03036
]
Ssed_1148
Enzymes [BR:
sse01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
Ssed_1148
Messenger RNA biogenesis [BR:
sse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Ssed_1148
Ribosome biogenesis [BR:
sse03009
]
Eukaryotic type
90S particles
RNase
Ssed_1148
Prokaryotic type
rRNA processing factors
Ssed_1148
Chromosome and associated proteins [BR:
sse03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
Ssed_1148
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
RM44_endonuclase
DND1_DSRM
DSRM_2
Motif
Other DBs
NCBI-ProteinID:
ABV35759
UniProt:
A8FSD6
LinkDB
All DBs
Position
1368592..1369269
Genome browser
AA seq
225 aa
AA seq
DB search
MEPIKNMPRLCRTLGYEFNDQSLLEHALTHRSASSKHNERLEFLGDSILSIIISDALFHQ
FPKATEGDLSRMRATLVCGKMLAEIGFEFKLGDYLNLGPGELKSGGFRRESIIADAVEAI
IGAVYIDSGVEKCRCLVLSWYESRLAIIQPVNQKDPKTLLQELLQGFKKPLPVYKVIDIK
GEAHAQTFTVECYVEELSKPVIGIASSRRKAEQLAAADALELMKR
NT seq
678 nt
NT seq
+upstream
nt +downstream
nt
atggaaccgattaaaaacatgcctagattatgtcgaactttaggttatgagttcaacgat
caatcgctactcgagcatgcattaacgcatcgtagtgcgtccagtaaacataatgaaagg
ctagagttccttggagactctatactgtccattatcatctctgatgcactgtttcatcaa
ttccctaaggccactgagggcgatctgagtcgtatgcgtgccacactcgtctgtggaaaa
atgctggctgagatcggtttcgagtttaaattaggcgattacctgaatttaggcccggga
gagttgaaaagcggtgggtttcgacgagagtcaatcattgccgatgccgtagaagccatt
ataggcgccgtctacatcgattcaggtgtagaaaagtgtcgctgtttagtgctgagttgg
tatgagtctcgtcttgcgattatccagcctgtaaaccagaaagatccaaaaaccttgttg
caggagttgttgcaaggttttaaaaaaccacttccggtctacaaagtaatagacattaaa
ggtgaggcgcacgcgcaaacctttacggtggagtgttatgttgaagagttaagcaagccg
gttatcggtattgcaagttcccgtagaaaagcggagcagctagcggctgccgacgctttg
gagttaatgaagagatga
DBGET
integrated database retrieval system
