Shewanella sediminis: Ssed_1286
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Entry
Ssed_1286 CDS
T00596
Name
(GenBank) RNA methyltransferase, TrmA family
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
sse
Shewanella sediminis
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sse03009
]
Ssed_1286
Enzymes [BR:
sse01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
Ssed_1286
Ribosome biogenesis [BR:
sse03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Ssed_1286
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
TRM5-TYW2_MTfase
PCMT
Methyltransf_11
MTS
Methyltransf_23
Methyltransf_12
RrnaAD
Methyltransf_15
Cons_hypoth95
Methyltransf_4
UPF0020
Ubie_methyltran
N6_N4_Mtase
CMAS
PrmA
TehB
Methyltr_RsmB-F
Methyltrans_SAM
TPMT
FtsJ
ADH_zinc_N
GARS_N
Motif
Other DBs
NCBI-ProteinID:
ABV35897
UniProt:
A8FSS4
LinkDB
All DBs
Position
1526890..1528218
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AA seq
442 aa
AA seq
DB search
MAQFFKAKPNSSKQLSAKVTLEVTKLDHLGAGMAQHQGKIVFIPGALPNEKVTVQLTEQK
KRHARAKLLKIESDSNDRVEPKCPHYQQCGGCDLQHLSIDKQRSYKQSALVDLMAKLSHT
EAESLAPALIGQEWDYRRRARLATHYNKESKQITLGFRASASKQVINIDVCPVLAKPLSD
LIAPLSLLLNQLSGKKALGHLELIDADNGYFAVLRMTKALSDKDAKKLTAFANEKSISLI
VQGNEGEFTILGDRNELPYYALDDVKLNFTPGNFIQVNAAINESMVKQAVDWLSVKPNER
VLDLFCGVGNFSLPLAKSGAEVIGVEGVPEMVKQARENAADSGLDNVSFFHTDLSADLSK
ETWLGKVDKLLLDPARAGAFESLQWLKKMKPKAIVYVSCDPSSLARDSEPLLKHGYKLKK
LGLIDMFPQTHHIEAMALFELD
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atggcacagttttttaaagcaaaaccaaacagttctaagcaactatcggcaaaagttaca
ttagaagtgactaaattggatcatttgggtgcaggaatggcacagcatcaggggaaaatt
gtatttattcccggtgcgcttcccaacgaaaaggtgaccgtacagctcaccgaacaaaaa
aagcgtcacgcccgcgccaagctgcttaagatagagtctgattcaaatgacagagtcgaa
cccaagtgccctcattaccaacagtgtggcggttgcgatcttcaacatctctctatagat
aaacaacgcagctataaacagtctgcattggtcgatcttatggcaaagctgagtcatacc
gaagccgagtcgttagcgccggcattaataggccaggagtgggattatcgcaggcgtgct
cggttagcgactcactacaataaagagagtaagcaaataaccttaggcttcagggcctct
gcgagcaaacaggttatcaatatcgatgtgtgtccggtactggctaagccattatctgac
ttaattgcgccattatctctgttgctgaatcaactttcgggtaaaaaggccctgggccat
cttgagttaattgatgccgataatggctattttgccgtattaaggatgaccaaggcatta
tctgataaagatgcaaaaaaactcacggccttcgcgaatgagaaaagcatcagcttgatt
gttcagggaaatgaaggtgagttcactattctgggtgatcgtaatgagttgccatattac
gctttggacgatgtgaagctaaactttactcccggtaactttattcaggtcaatgctgcc
atcaatgaatctatggtgaagcaggccgtagattggctgtcagtaaagccaaatgaacgg
gtgttagacctgttttgcggtgtaggtaatttcagcctgccactggcaaaatccggcgcc
gaagtcattggtgtcgaaggtgttcccgagatggttaaacaggccagagagaatgctgca
gacagcggattagataatgtttcattttttcataccgatctcagtgctgacctctctaaa
gagacgtggttaggaaaggtagataaattattattagatcctgccagagcgggagcgttt
gagagcctgcaatggttgaaaaagatgaagccgaaagcgatagtttatgtgtcatgcgac
ccttcgagcttagcccgggacagtgagccattattaaagcatggttataagcttaaaaag
cttggcttaatcgatatgttccctcaaacccaccatatcgaagccatggcgttgtttgag
ttggattaa
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