Shewanella sediminis: Ssed_1937
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Entry
Ssed_1937 CDS
T00596
Name
(GenBank) exodeoxyribonuclease V, gamma subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
sse
Shewanella sediminis
Pathway
sse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Ssed_1937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sse03400
]
Ssed_1937
Enzymes [BR:
sse01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Ssed_1937
DNA repair and recombination proteins [BR:
sse03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Ssed_1937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
UvrD_C
DUF4404
Motif
Other DBs
NCBI-ProteinID:
ABV36548
UniProt:
A8FUM5
LinkDB
All DBs
Position
complement(2332461..2336024)
Genome browser
AA seq
1187 aa
AA seq
DB search
MLYLVQSNRMEALSAQLATELQTPIPGMPLLMPEQVLVQSPGMSTWLRLEIARQNKIAAA
LEFPLPSSFIWQLCHTLLPDVPKENAFTKPSMTWKLMELLPELLQIDEFAPLNNYLNAAN
CPDEATEALPEDPLKLFQLCGQIADIFDQYLVYRPDWIAAWEANEPTLPPKDDKLSPAQA
WQPILWRALIEFNNLRLNKSRYHRANLHQSLFDALDDPDTCLDGLPRRLFVFGISSMAPQ
TLDVLYHLAKRIDVIMLNLSPCQHYWGDIVDPRLRARMALEYANRNKLEALWEDKLEVGN
PLLANNGKMGRELLDLILELPEEHTNFNFECYQDPLESAPQTLLRGVQHDILELSTRNRS
LGPDASLYLTLDDRRVLTKADDSLTLRSCHSPLREIETLHDHLLEMLSREPADPSDPLLA
KDIVIMLPDVAAYAPYIDAVFSAKQGAHYIPYAIADRGAAQESPLINSFLHILAINQSRF
ALTDILGILEVPAVLRRFELDDEALSMIRHWLEQAGVRWGRDENSRAAQSMPAFDKNSWA
FGIKRLILGYAFSDDAELYHDTLLVEGIEGQSAQALGKLLNFIETLDEYQQQLAQNCSIE
ERMSQLAQLLEDFYEVDDEEQQQLQAIREAISKLKTELADSGQVTPLNTQVLQNWFNSTL
SESRVGQRYLAGSVNFCTLMPMRSIPFKLVCLVGMNDGIYPRVQHPVGFDLVAQFGPRKG
DRSRRLDDRYLFLEAILSAREQLYISYIGHSERDNSERIPSMLVSELVEYCQLCYLPEGD
LHNPDNEPDIPAIEKAIHKQLLIEQPLQPFDERLYLPDNGDDPQLKQSYSAQWCPARTSD
NSAETPRFIEPGQKIEQESLASPCVEENELEVSALIRFFRNPAQYFFNRSLKVDLGLNIQ
ADDNDEPFSLNALERYKLQANLLDNAISQGLELPGEELLQRLKASGELPLKPFDDLLLNQ
YLHDIKPLIGRAIYLQGENQHSLDIELPFALGDGTGNTITEPVTLVGRIDDLCAKGLVNY
RPGTANGRDLIRVYLRHLCISAMGTDAKESASRSDKPHISYLLDIGHFHAFHGVAPEQAN
VQLSLWLSYFQSGQIHPLMFMPRTALAYVEAEGDHSDKLKEAQSQWKDEQSQLGEGFEPH
YQRLFSFPEDFKEDEFGQVAMSLLSPMLSLYHKDKLSELASFVEGGC
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgctctatcttgtacagtctaatcgaatggaagcactctcggcccaactcgcgaccgag
ctacagacgccaattcccggtatgccactgttaatgcccgagcaggtgttagtccaaagc
cccggcatgtccacctggctgagactagagattgcaagacagaacaagatagccgcggcg
cttgaatttccgctgccctcaagctttatctggcagctgtgccacaccctgttgcccgat
gtgcccaaggaaaatgcctttaccaagccctccatgacctggaagctgatggagttgctg
ccggagctactgcagatcgatgagtttgcgccgcttaacaactatctcaatgctgctaac
tgcccggatgaagcgacagaggctttaccggaggatccattaaaactgtttcaactgtgc
gggcaaatagccgatatcttcgatcaatacctggtctatcgtcccgactggatagccgca
tgggaagccaatgagccgaccctgccgcctaaagatgataaattatctccggcccaggcc
tggcaacccatcttgtggcgcgcccttatcgaatttaataacctgcgtctcaacaagagt
cgctaccacagggctaacctgcatcagtcgctgtttgatgcactcgatgaccccgatacc
tgcctcgatggtctacccagacggttattcgtattcggtatctcatccatggcgcctcaa
accttagatgtgctctatcatctggctaagcgtatcgatgtgatcatgctgaatttaagt
ccctgtcagcactactggggcgatattgtcgaccctcgtttacgcgctcgtatggcgctt
gaatacgccaacaggaataaactcgaagccctatgggaagataagctcgaggtgggtaac
cccctgctcgccaataacggtaagatggggcgtgaactcctggacttgatactggagcta
ccggaggagcacaccaactttaatttcgagtgttaccaagacccgctggaaagtgcacct
cagacactgcttcgtggcgttcagcacgacattctcgaactcagtacccgcaacagaagc
ttaggccccgatgcctctctgtatctgacactggatgatcgccgcgtgctcactaaagct
gacgactcgctgacacttcgcagttgtcacagtccactgcgtgaaatcgagaccctgcac
gatcacctgctcgagatgttgtcccgtgaacctgctgacccaagcgatcccctgcttgca
aaagatatcgtcatcatgctgccggatgtggcagcttacgcgccttatatcgatgcggtg
ttctcggccaaacagggcgctcactacatcccttacgccatcgccgatcgcggcgcggcg
caggaatcgcccctgatcaacagcttcctgcatattctggccatcaatcagagtcgcttc
gccctgaccgatatcttagggatcttagaggtgcctgcggtactcagacgattcgagctc
gatgatgaagccctctccatgatacgccactggctcgaacaagccggcgtgcgttggggg
cgggatgaaaacagccgtgcagcccaatctatgcccgcattcgataagaactcctgggcc
tttggaatcaagcgtctgatcttaggctacgccttcagcgacgatgctgaactttatcat
gacaccctgctggtcgaaggcatcgaaggacaatcggctcaggccctgggtaaactactc
aacttcatcgaaaccttagatgagtatcagcagcaactcgctcaaaattgctcaatagag
gagcgcatgagtcagttagctcagcttctcgaagacttttatgaggtcgatgatgaggag
caacaacagctgcaagcgatacgcgaggccatcagcaagcttaaaactgagctcgccgat
tccggacaagtcacaccgctgaatactcaggtgctgcaaaactggtttaacagcaccttg
agtgaatcccgtgtcggccaacgttatctggccggtagcgtcaatttttgtaccttgatg
ccaatgcgctccattccctttaaattggtgtgcttagtcggcatgaatgatgggatctac
ccaagggtacagcacccggtcggtttcgatcttgtggcccagttcggaccccgtaaaggc
gatcgttcacgtcgcttagatgacagatacctgtttttagaggcgatactctcggccaga
gagcaactctacatcagctatatcggccacagtgagcgcgataactcggaacggatcccc
tccatgttggtctcagagttggtcgaatattgtcagctatgttatctacccgagggagat
cttcacaatccagacaatgagcccgatattccagccatcgagaaagcaatccataagcag
ttattgatagaacaacctctacagcctttcgatgagcggctttacttgcctgacaatggt
gatgacccccaacttaaacaaagttattccgcccagtggtgtccggcaagaacgagcgat
aatagcgctgaaacaccccgctttatcgaacctggtcaaaaaattgaacaagagagtctg
gcatcgccttgcgtagaggagaacgagcttgaggtctcggcgcttatccgtttcttcaga
aacccggcgcaatactttttcaatcgaagcctcaaggtcgacttaggcctgaacattcaa
gccgatgataacgatgagcccttcagtctgaacgcgctcgagcggtataaactgcaggca
aacttactcgataacgccatatctcaaggtttagagctcccgggcgaagagctgttgcaa
cgattaaaggccagtggcgagctgcccctgaagcctttcgatgatctcctgcttaaccag
tatctgcatgacattaagcccttaattggccgggcgatctatcttcagggtgagaaccaa
cactcactggatattgagctgccctttgctctgggcgatggcacaggcaataccatcact
gagcccgtcacattagtggggcgaatcgatgatctctgcgctaaggggctggtcaactat
cgacccggcaccgccaatggccgggatctgattagagtctacctaagacatctttgtata
agtgctatggggacagatgctaaagagtctgcatcccgaagcgataaaccacatatcagc
taccttctagatatcggccactttcatgccttccatggcgtcgcgcccgagcaggcgaac
gtgcagctgagtctatggctgagttatttccaatcgggacaaatccatcccttgatgttt
atgcccagaaccgccctcgcctatgtcgaagccgagggggatcacagcgataaactcaag
gaagctcaaagccaatggaaagatgaacagagccaactcggtgaaggcttcgagcctcat
taccagcgtctgtttagtttccctgaagatttcaaagaagatgagtttggacaggttgcc
atgtcactgctaagcccgatgctcagcctctatcacaaagataagctcagcgagcttgca
agtttcgtcgaaggaggctgttaa
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integrated database retrieval system
