Shewanella sediminis: Ssed_1993
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Entry
Ssed_1993 CDS
T00596
Name
(GenBank) DNA-directed DNA polymerase
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
sse
Shewanella sediminis
Pathway
sse03030
DNA replication
sse03430
Mismatch repair
sse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ssed_1993
03430 Mismatch repair
Ssed_1993
03440 Homologous recombination
Ssed_1993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sse03032
]
Ssed_1993
03400 DNA repair and recombination proteins [BR:
sse03400
]
Ssed_1993
Enzymes [BR:
sse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Ssed_1993
DNA replication proteins [BR:
sse03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Ssed_1993
DNA repair and recombination proteins [BR:
sse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Ssed_1993
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
RNase_H_2
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
ABV36602
UniProt:
A8FUS9
LinkDB
All DBs
Position
2409727..2410455
Genome browser
AA seq
242 aa
AA seq
DB search
MNIVSSAKRQVILDTETTGMNQGAGAIYLGHRIIEIGCVEVINRRLTGRHYHEYINPQQI
IDEEAIEVHGITNEYVANKPKFAEISQSFIDFIDGAEVVAHNASFDVNFMDHEFSLLQPR
GPKTADICQILDTLDIAKFLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYLM
MTGGQTKFNLSGDKAGEGEGGIIRLNSNRANLKVIRATADELTKHEERLDLVAKSGQCIW
RG
NT seq
729 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcgtttcaagtgcaaaacgtcaggttattctggatacagaaaccacaggtatg
aaccaaggggccggcgccatctaccttggacaccgtatcatcgaaattggttgtgtggag
gtgattaatcgtcgcctaaccggacgccattatcatgagtacatcaatccgcaacagatc
atcgatgaagaagcgattgaagttcacggtattaccaatgaatatgtcgctaacaaaccc
aaatttgccgagatttcacaaagttttatcgattttatcgatggcgccgaagtggtggct
cataatgcgagcttcgacgttaactttatggatcacgagttttctttgctgcagccgcga
ggtccgaaaacggcggatatctgtcagattctggatactctggatattgcaaaatttttg
cacccggggcagaaaaataacctggatgccttgtgtaagcgatacggtatagataactct
cgccgggaactccacggtgctttactcgatgcggagatcttagccgacgtctacctgatg
atgacgggtggtcagactaagttcaacctttccggtgataaggctggagaaggtgaggga
ggtatcattcgtttaaacagtaatagagcaaatcttaaagtgatcagagcaacggccgat
gaactaactaagcatgaagaaagattagatttagttgcaaaatcaggacaatgtatttgg
cgaggatag
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integrated database retrieval system
