Shewanella sediminis: Ssed_2013
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Entry
Ssed_2013 CDS
T00596
Name
(GenBank) thiamine biosynthesis protein ThiC
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
sse
Shewanella sediminis
Pathway
sse00730
Thiamine metabolism
sse01100
Metabolic pathways
sse01240
Biosynthesis of cofactors
Module
sse_M00127
Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
Ssed_2013
Enzymes [BR:
sse01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
Ssed_2013
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-ProteinID:
ABV36622
UniProt:
A8FUU9
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Position
2436682..2438640
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AA seq
652 aa
AA seq
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MSTRRETRAQAQQFIDNLKPLQHPNSEKVYLVGSRDDIRVGMRQIHQSETMIGGTESHPV
LESNPPLKVYDCAGPYSDPNAKINVREGLDKFRANWILERNDTEQLIAASSGFTQQRLAD
YGLDHLRFDSLLSPRKAKQGQCVTQLHYARQGIVTPEMEYIAIRENMALSEVTDEALTQK
AEGESFGAAISQPITPEFVRQEVARGRAIIPLNINHPEAEPMIIGRNFLVKVNANIGNSA
VTSSIEEEVEKLVWSTRWGADTVMDLSTGRYIHETREWIIRNSPVPIGTVPIYQALEKVN
GVAEDLTWEIFRDTLLEQAEQGVDYFTIHAGVLLRYVPMTAKRLTGIVSRGGSIMAKWCL
SHHLENFLYEHFRDICELCAAYDVSLSLGDGMRPGSIADANDEAQFSELETLGELVKIAW
EYDVQTIIEGPGHIPMNLIKENMDKQLEVCDEAPFYTLGPQTTDIAPGYDHFTSGIGAAM
IAWYGCAMLCYVTPKEHLGLPNKEDVKQGLITYKIAAHAGDVAKGHPTAQIRDNALSKAR
FEFRWEDQYNLGLDPDTARAYHDESLPQESAKVAHFCSMCGPKFCSMKISQEVREYAAAQ
EVKLHTDTEFKAKSVKESGMAQMSAEFKAKGAALYHESGALVEDVELVETEG
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacacgtcgtgaaacccgagctcaagctcaacaatttattgataatctaaaacca
cttcaacatccaaattctgagaaagtttacttagtcggtagccgtgatgatattcgggta
ggtatgcgtcaaatacaccaatcagagaccatgattggcggcaccgaatctcatcccgtt
ttagaatcaaatccgccattgaaagtgtacgattgtgccggtccatattccgatcccaac
gccaagattaacgtccgtgaaggtctggataagttcagggcaaattggatccttgagcgc
aatgataccgagcaattgatcgctgccagttctggttttacacagcaaaggttagccgat
tacggactcgaccatctgcgtttcgactcgcttctttcacccagaaaggccaaacaaggt
cagtgtgtgactcaacttcattatgccagacaggggatagttaccccggaaatggagtac
attgccatcagagagaatatggctttgagtgaagtgaccgatgaagcgttaactcagaaa
gcagaaggtgaaagtttcggcgcggcgataagtcagcctattacccctgagtttgtccgg
caagaggtggcacggggacgtgccattattccgctgaatattaaccatcccgaagccgaa
cctatgattatcggtcgtaactttctggttaaagtgaacgccaatataggtaactctgcg
gtgacctcttcaatcgaagaggaagttgaaaaactggtttggtcgacgcgttggggagcc
gatacggtaatggatctatcgacgggtcgatatattcatgaaacaagggaatggatcata
cgaaactcgccagtgcctattggtaccgtgcccatctaccaagctctggagaaggtcaat
ggcgtggcggaagacctcacatgggagatattcagagatactctgcttgaacaggcagag
caaggcgtcgattactttactatccacgcaggtgtgttgcttcgctacgtcccgatgacg
gccaagcgtttgaccggcatcgtctcacggggcggatcaattatggcaaagtggtgtctc
tctcaccatcttgaaaacttcttgtatgaacacttccgggatatctgtgagctttgcgcc
gcctatgacgtttcattgtcactcggtgatggaatgcgaccgggatcaattgccgatgct
aacgatgaagcacaattttctgaactcgaaaccttaggtgagttagttaagattgcctgg
gagtacgatgtgcaaacgatcatcgaggggccgggtcatatccccatgaatctgattaaa
gagaacatggataagcagcttgaggtgtgtgatgaagcgccattttataccttaggccct
cagactaccgatatcgcaccgggttatgatcatttcacttcggggatcggcgcggcaatg
attgcctggtatggctgtgccatgctctgctatgtgacgccaaaagagcacttaggttta
ccgaacaaggaagacgtcaagcaaggcttgatcacctataagattgccgctcatgccggt
gatgtggctaagggtcatccgacagcacaaattcgagacaatgccctgtccaaggcaagg
tttgagtttcgctgggaagatcaatataacttaggactggatcctgacaccgccagagcc
tatcacgatgaatcgcttccgcaggaatcggcgaaagttgctcatttctgctccatgtgc
gggcccaagttctgttcgatgaagataagccaagaggtcagagaatatgcggcggcgcaa
gaggttaagctgcatacagacacggagtttaaggctaagagtgtcaaagagtcgggtatg
gctcagatgtctgcagaatttaaggctaagggggcggcgctttaccatgaaagcggcgcg
ttggtggaagatgttgaacttgtagaaaccgagggctag
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