Shewanella sediminis: Ssed_2034
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Entry
Ssed_2034 CDS
T00596
Name
(GenBank) Holliday junction DNA helicase RuvB
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
sse
Shewanella sediminis
Pathway
sse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Ssed_2034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sse03400
]
Ssed_2034
Enzymes [BR:
sse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ssed_2034
DNA repair and recombination proteins [BR:
sse03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Ssed_2034
RecFOR pathway proteins
Ssed_2034
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
RuvB_C
AAA
AAA_5
AAA_16
TIP49
AAA_14
Mg_chelatase
AAA_3
AAA_22
nSTAND3
AAA_24
AAA_17
Bac_DnaA
Rad17
AAA_18
NB-ARC
RNA_helicase
AAA_25
IstB_IS21
NTPase_1
TsaE
NPHP3_N
AAA_11
NACHT
ABC_tran
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
ABV36643
UniProt:
A8FUX0
LinkDB
All DBs
Position
2461338..2462354
Genome browser
AA seq
338 aa
AA seq
DB search
MIEADRLIHAEPQGPEERDEQIDRAMRPKLLDEYTGQDDTRAQLKIFIKAAQNRGEALDH
MLIYGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEPGDVLFIDEIHR
LSSVVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAGALTSPLRARFGI
PLRLEFYNTKDLSSIVSRSANVLELPIDDEGAIELAKRSRGTPRIANRLLRRVRDFAEVK
HDGEINKAVADLALDMLDIDSEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETI
EDVLEPFLIQQGFIQRTPRGRIATDRAYRHFDIIQPEK
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgatagaagccgatcgtttaatccatgctgagcctcaagggcccgaagagcgtgatgag
cagatagacagggcgatgcgccctaagttgctcgatgagtatacgggtcaagatgatacc
agagctcagttaaagatatttattaaagcggcgcaaaatcgcggtgaggctctcgatcat
atgctgatctatggccctccggggcttggaaagactacattggcgatgattgtcgccaat
gagatgggggtaaatattaaatctacctcgggacctgtgctggaaaaagccggcgatctt
gctgcactcctgactaatcttgagcctggtgatgtcctgtttatcgatgagatccaccgc
cttagttcggtagtcgaggagatcctttatccggctatggaggattaccaactagatatc
atgattggtgaaggcccggcagctcgttcaatcaaattggatctgcctccctttacgctt
attggcgctactacgagagctggggcgttaacttcgccactgcgcgcaagatttggtatt
cctctcaggttagagttttataacacgaaagatctcagttcaattgtatcgcgttcggct
aatgtcctcgagttgcccatcgatgatgaaggtgcaatagagctggccaagcgctctcgt
ggaacgccgcggatcgccaatcgtttgttacgacgagtacgagattttgctgaggtaaag
cacgatggcgaaatcaataaagctgtggcagatctggcattagatatgttggatatcgat
tccgaaggtttcgactatatggataggaagctattgctggccatcatagataagtttatg
gggggacccgtaggcctcgataacttagccgctgcgattggcgaagagagagagaccatc
gaagatgtgttagagccctttttgatccaacagggatttatccaacgtacaccaagaggg
cgtattgccacagaccgtgcttaccgccatttcgacatcattcaacctgaaaaatag
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