Shewanella sediminis: Ssed_2046
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Entry
Ssed_2046 CDS
T00596
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
sse
Shewanella sediminis
Pathway
sse03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Ssed_2046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sse03400
]
Ssed_2046
DNA repair and recombination proteins [BR:
sse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ssed_2046
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Ssed_2046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_22
AAA_30
Kinesin
UB2H
Ish1
TFIIE_beta
AAA_16
DUF87
Motif
Other DBs
NCBI-ProteinID:
ABV36655
UniProt:
A8FUY2
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All DBs
Position
2479256..2481283
Genome browser
AA seq
675 aa
AA seq
DB search
MGKNSVTESTFQLESQYSPAGDQPKAIEKLVDGIESGVACQTLLGVTGSGKTFTIANVIK
QLARPTIIMAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPSTNTFIEKDAS
VNAHIEQMRLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDFMDQRDILK
RLSELQYTRNDIELKRGTYRVRGEVIDIFPADSDKEAIRVELFDVEIERLSLFDPLTGHI
SKRIARTTIYPKSHYVTPREKILAATEEIKEELRIRKKQLLDNNKLIEAQRINERVQYDI
EMMTELGYCSGIENYSRYLSGRAEGDGPPTLLDYLPDDGLLIIDESHVTVPQIGAMYKGD
RSRKSNLVEYGFRLPSALDNRPLKFEEFERLMPQTIYVSATPSQYEVDKSDGEVAQQVIR
PTGLLDPVLEVRPIAIQVDDLLSEVAQRVKVNERVLVTTLTKRMSEDLSEYLDEHGIKVR
YLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVCILDADKEGFLRSERS
LIQTIGRAARNINGKVILYADKITDSMSRAMGETERRRKLQHQFNLDNGIVPKGVSKKIT
DVMDVGDKSADGQDVDNNKVAESRAPYGGPDIATLSHQMDALEKQMHEHAKNLEFEQAAA
LRDQVAKLREALIKA
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggggaagaactctgtgacagaatctacgtttcaacttgaatctcaatacagtccggca
ggggatcaacctaaagcaattgaaaagctggttgatggtatagagtccggagttgcgtgc
caaactttactcggtgtaaccggctcaggtaagacgtttactattgctaatgtgatcaag
cagctagccaggcctactattatcatggcgcctaataaaaccttggccgctcaattatat
ggtgagatgaaggagttttttccacacaatgcggttgagtattttgtctcctattacgat
tattaccaacccgaagcctatgtgccatcgacaaatacctttatagaaaaagatgcttcg
gttaatgcacatatagaacagatgagactctcagcaacaaaagccctgttagaacgcaaa
gatgtggttctcatcgcgtcagtatcggccatctacggtctgggcgatcccgattcttac
ttgaagatgttattacacctgagacaaggtgatttcatggatcagagagatatcttaaag
cggttaagcgagttgcaatatacccgtaatgatatcgaattgaagcgggggacttatcga
gtcagaggggaagtcatcgatattttccctgccgattcggataaagaggctattcgtgtt
gagctgtttgatgtagagatagaacgtttaagtttattcgatccgctaacgggtcatatc
agtaagcgcattgccagaaccaccatataccctaagagccattacgtcacaccacgtgag
aaaattctagctgcgaccgaagagatcaaggaggagttaaggataaggaagaagcaacta
ttagataataataagctgatagaggcgcaaagaattaacgaacgtgtgcaatatgatatc
gagatgatgaccgagctgggttactgctccggtattgagaactattccagatacctatcc
ggtagagctgagggtgatggtccgccgactctacttgattatcttcccgatgacggactg
ttgatcatagatgagtcacatgtgaccgttccgcaaataggtgctatgtacaaaggggat
agatccagaaaatctaatctggtcgagtatgggtttcgattaccatctgcattggataac
cggccattgaagtttgaagagtttgaaagactgatgccgcaaacaatctatgtgtcggca
acacccagtcaatacgaggtagataagagtgatggtgaggtcgcccagcaggtcatcaga
ccaacagggctactggatcctgtgctggaagttcgtccgatcgctattcaagttgatgac
ttactttctgaagttgctcaacgagtaaaggtaaatgagcgtgtactcgtgacaaccttg
actaaacgtatgtcagaagacctgtctgaatacctcgatgagcacgggataaaggtcaga
tatctgcactctgatatcgatacggttgaacgagtggagatcatcagagacctacgttta
ggtgtgttcgatgtgctggttggaattaacttgttaagagaagggttggatctacctgag
gtttcgctggtatgcatactcgatgccgataaagagggcttcttacgctcagaacgttca
ctcattcaaaccattggccgcgccgcgcgaaatattaacggcaaggttatcctctatgcc
gataagataacggattcgatgtcccgtgcgatgggggagaccgagcgacgtcgtaaacta
cagcatcaatttaatctcgataatggcatcgttcctaagggagtatctaagaagatcacc
gacgttatggatgtgggtgacaagagcgcagatggacaagatgttgacaataacaaggtt
gctgagtccagggcgccttacggcgggcccgacattgcgacactcagccatcaaatggac
gcattagagaaacagatgcatgagcatgctaagaaccttgagtttgaacaggcggctgca
cttcgcgatcaggttgcaaaattgcgagaggcactgattaaagcataa
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