Shewanella sediminis: Ssed_2303
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Entry
Ssed_2303 CDS
T00596
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing)
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
sse
Shewanella sediminis
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sse03032
]
Ssed_2303
03400 DNA repair and recombination proteins [BR:
sse03400
]
Ssed_2303
Enzymes [BR:
sse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
Ssed_2303
DNA replication proteins [BR:
sse03032
]
Prokaryotic type
DNA Topoisomerases
Ssed_2303
DNA repair and recombination proteins [BR:
sse03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Ssed_2303
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
Motif
Other DBs
NCBI-ProteinID:
ABV36912
UniProt:
A8FVN9
LinkDB
All DBs
Position
complement(2788824..2791538)
Genome browser
AA seq
904 aa
AA seq
DB search
MTDLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWN
KPYKKSARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYTLVDGQGNFGSVDGDAAAAM
RYTEIRMDKVAHQLLADLEKETVDFVPNYDGTEFIPSVLPTRIPTLLVNGSSGIAVGMAT
NIPPHNINEVVSGCLALIENPDLTINELMEYIPGPDFPTAAIINGRKGIIDAYHTGRGRA
VMRAKADVETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGM
RIVVEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREV
VTRRTVFELRKARDRAHILESLAIALANIDPIIALIKASPTPAEAKVKLIAEGWELGHVQ
GMLEKAGDDAARPEWLEPEYGIRDGRYYLTEQQAQAILDLRLHKLTGLEHEKILKEYEEL
LEIIAALLYILRSPERLMEVITEELQEVLENFGDERRTVINANEVDMSLEDLINEEDVVV
TLSHLGYAKYQALTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYW
LKVYQLPLASRTARGRPIVNILPLSEGERITAILPVREYADDKYIIMATAHGTVKKTALT
AYSNPRANGIIAVNLKDGDQLIGVDITNGEDEIMLFSDAGKVVRFNEKVRDSETGQVKLD
PETGEEVLALRPMGRTATGVRGIRLEDDQKVVSLIVPKDDGAILTVTENGYGKRTDLSEY
PAKSRATKGVVSIKISERNGAVVGAVQVGENDEIMLISDKGTLVRTPATGVSSIGRNTQG
VTIIRTAEEEKVVGLQRIDEIQDDEVELDEEGNPIVPATDEAVETTSEVDTPKADDAPEA
EPAE
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgactgatctggcttcatctataacaccaattaatattgaagacgaattaaagaattca
tatcttgattatgccatgagcgtaatcgtaggccgggcattaccagatgtccgtgatggc
cttaagcctgttcatcgccgcgttcttttcgcgatgagtgagcttaaaaatgattggaac
aaaccctataaaaagtcggcacgtgttgtcggtgacgtaatcggtaaatatcaccctcat
ggtgacaccgccgtttatgacaccatagtacgtctggctcagcctttctcgatgcgttac
accttggtcgatggtcaaggtaacttcggttctgtcgatggcgatgccgcggcagcgatg
cgttataccgaaattcgtatggataaggtagctcatcagttattggccgatcttgagaaa
gagacggtcgattttgttcctaactatgatggtactgagtttattccttcagtcttgccg
acacgtattccgacgcttctggttaacggttcatcgggtattgcggtaggtatggcaact
aacattccgccacacaacatcaatgaagtggttagtggctgtcttgccttaatcgaaaac
cccgatctgaccattaacgaattgatggaatacattccgggcccggattttccgacagcc
gcaatcatcaatggccgtaaaggtatcatcgatgcctatcacacgggtcgtggccgagct
gtcatgcgtgcgaaagccgatgtcgaaactgaagacaatggtcgcgagcgtattattgtc
cacgagatcccttatcaggttaacaaggcgcgcttgatcgagaagatagccgagctggtt
aaagataagaagatcgaaggcatcagtgggctgcgtgacgagtcagataaagacggtatg
cgtatcgttgtcgagatcaaacgtggtgaagtgggtgaagtcgttctaaacaacctttat
gcacaaacccaaatgcagtgctcgttcggtattaacatggttgctctgaccaatggtcag
ccaaaactatttaatctcaaagagatgcttgaatgcttcatcttacaccgtcgtgaagtt
gttacacgtcgaaccgtatttgaattgcgtaaagcccgcgatagagctcacatccttgag
tctcttgcgattgcattagctaacatcgatccaatcatcgcattgatcaaggcttctcca
acaccagccgaagcaaaagtgaagcttattgctgaaggttgggagttaggtcatgtgcaa
ggcatgcttgaaaaagcaggtgatgatgcagctcgccctgagtggttagagcctgagtac
ggtatccgtgacggtcgttactacttaacagagcaacaagcacaagcgatccttgatctg
cgtctacataagttgaccggtcttgaacatgagaagatcttaaaagagtacgaagagtta
ctggagatcattgcagcgcttctttatattcttcgcagcccggaacgtctgatggaagtt
atcactgaagagcttcaagaagttctcgaaaacttcggtgatgagcgtcgcactgtgatt
aatgcaaacgaagttgatatgagtcttgaagatctgatcaacgaagaagatgtcgtagtg
acgctatctcatcttggttatgctaagtaccaggcgcttacggactatcaagctcaacgc
cgtggcggtaagggtaaagctgcgacaaaagtgaaagatgaagacttcgtagagaagtta
ctcgttgccaacacccatgatacgatcctttgtttctctgatttcggtaagatgtattgg
ctgaaagtataccagttgccacttgcgagccgtacggcccgaggtcgtccaattgtgaac
atactgccactgtctgaaggcgaacgtattaccgctatcttaccggtacgtgaatatgcc
gatgataaatacatcatcatggccactgctcacggtactgttaagaagactgcactgact
gcttacagcaacccacgtgcgaacggtatcattgcggttaaccttaaagatggcgatcag
cttattggtgtagatatcaccaatggcgaagatgagatcatgctcttctcagacgcgggt
aaagtggttcgtttcaatgagaaggtacgtgattcagaaaccggtcaagttaagctcgac
cctgaaacaggtgaagaggtcttagccttacgcccaatgggtcgtacagcgactggtgtt
cgcggtattcgtcttgaagatgatcaaaaagtggtatcgctaatcgtgcctaaagacgat
ggtgcaatcttgactgtgactgaaaatggttatggtaagcgtaccgacctttctgagtac
ccagctaagagccgtgctactaaaggtgtggtttcaattaagatcagtgaacgtaacgga
gccgttgtcggtgccgttcaagtaggtgaaaacgatgaaatcatgctgatcagtgacaag
ggcaccttagtacgtactcctgcgacgggtgtatcgagcattggtcgtaacacgcaaggt
gtaacgattattcgtactgcagaagaagagaaggttgttggtctgcagagaatcgatgaa
atccaggatgatgaggtcgaactcgacgaagagggcaacccgattgttcctgcaaccgat
gaggcagtagaaacaacatctgaagtagatacacctaaagctgacgatgcaccagaagct
gagccagcagagtag
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