Shewanella sediminis: Ssed_2318
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Entry
Ssed_2318 CDS
T00596
Name
(GenBank) 23S rRNA (Gm2251)-methyltransferase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sse
Shewanella sediminis
Pathway
sse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ssed_2318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sse03019
]
Ssed_2318
03400 DNA repair and recombination proteins [BR:
sse03400
]
Ssed_2318
Enzymes [BR:
sse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ssed_2318
Messenger RNA biogenesis [BR:
sse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ssed_2318
DNA repair and recombination proteins [BR:
sse03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Ssed_2318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABV36927
UniProt:
A8FVQ4
LinkDB
All DBs
Position
complement(2809881..2811827)
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AA seq
648 aa
AA seq
DB search
MSQSPHALLQAHFGFSDFRSGQYDVINHVLQGHSAAAIFPTGSGKSLCYQLPAIALPNLT
LVVSPLLALIQDQLSFLQSKGINAASIDSSQSREQTLDVMRGVRQGEVKILMISVERLNN
ERFRQFISEVPVSMLVVDEAHCISEWGHNFRPDYLKLPRYRKELNIPQTLLLTATATPKV
IEDMGSKFGIAPEKVTLTGFYRPNLHLNVKGVASRDKVDELALWLSSRVHQSGIIYVTLQ
QTAEFVAEKLSQRNIPAKAYHAGMASEVRQAIQHDFMSGKQEIIVATIAFGMGIDKSDIR
FVAHYDLPKSIENYAQEIGRAGRDGLNSDCLVLANADNLSTLENFVYGDTPEPGAISVVL
DEILKAAELSSGQAQWEVVLNSLSNQSNIRPLSLKTLLVYLELLNIIKPTYSYFAEYKFK
YLMPEAQIIEFFKEERRDFIRAIFTSADRAKIWSSVNFDKLNTAYASDRQRVLKAINYLD
EKGMIELQSKQMTQVYQILDTRFDREQLQISLFERFNGKETSEVKRINQLIGLFTSDQCL
SHQLAHYFADEQMTQNCGTCSVCRGEQAVLPPIPYLKPLDEIDFNQITAEAVSKLGKASS
IVLVSRFLCGLTTPIFTKLKLRACRGFASLEKYRFSEVKLWVQSHLSD
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaatctccccatgcattattacaggctcactttggattttcagatttcaggagt
ggtcaatatgatgtgattaaccatgttcttcaagggcatagcgccgcggctatatttcct
actggctcgggtaagtcattgtgttatcagttgccggcaattgcgctacccaaccttacc
ttagtggtttcgccactattagccttgattcaggaccagttgtcattcctgcagtcgaag
ggaattaacgctgccagtatcgactccagtcagagtcgggagcaaaccctggacgtcatg
cgcggggtgagacagggagaagtaaagatattgatgatctctgttgagagactcaacaat
gagcgtttcaggcagtttatcagtgaggtgccggtttcaatgttagtggtcgatgaggct
cactgtatctccgagtggggccacaattttcgccctgattaccttaagctgccacgatac
aggaaagagttgaatatccctcaaactctactgctgactgccacagcgacacctaaggtg
atagaggatatgggcagtaaatttggcatagcccctgaaaaagtcaccttaaccgggttt
tatcggcccaaccttcacttaaatgttaagggggtcgctagcagggataaagttgacgag
ttggcgttatggcttagctccagagtccatcaatccggcatcatctacgtcaccctgcaa
caaaccgcagaatttgtggccgagaaacttagccagcgcaacattcctgccaaggcctac
catgccggaatggcgtccgaggtcaggcaggctatccagcatgacttcatgtccggaaag
caagagatcatcgtcgcgaccattgccttcgggatggggatagataagagcgatatccgt
tttgtggcgcattatgacctgcctaaatccatcgaaaactacgcccaggagattggtcgt
gcgggacgggatggattgaactcagattgtttagttctcgccaatgccgataacctgagc
accctggagaactttgtttatggtgatacgcccgagcccggcgccatcagcgttgttctc
gatgagatcctcaaagcggcagagctgagctctggacaagctcagtgggaggtcgtactt
aacagtttatctaatcagtccaatatccggcccctgtctttaaaaacactcttggtttac
ctcgaacttctgaacattattaagccgacatacagctattttgcagagtataagtttaaa
taccttatgcctgaggcacagataattgagttttttaaagaggagaggagagactttatc
cgggccatatttaccagcgctgacagggcaaagatatggtccagtgtgaacttcgataaa
ctgaatactgcttatgccagtgaccgtcagcgggtattgaaagcaatcaactaccttgat
gaaaagggaatgattgagctgcaaagtaaacagatgactcaggtatatcaaattctcgat
acccggtttgaccgggaacagctacaaatatccctgttcgaacgcttcaatggtaaagag
accagtgaagtaaaacgcattaatcagttgattggcttatttacatcggatcaatgtctg
agtcatcagctggcacactactttgccgacgagcagatgactcaaaattgtggtacctgt
tcggtttgccgaggcgagcaggcggtgctacctccaatcccctatctaaaacctctcgat
gagatagattttaatcaaattactgctgaggctgtgtctaagttaggtaaggcatccagt
atcgttctggtgtcgcgttttttgtgtggtctaacgacgccaatcttcactaagttgaag
ttacgagcctgcagagggttcgctagtttagagaagtaccgcttcagtgaagtgaaactc
tgggttcaatcacacctgagtgactag
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