Shewanella sediminis: Ssed_2451
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Entry
Ssed_2451 CDS
T00596
Name
(GenBank) peptidoglycan-binding domain 1 protein
KO
K21470
L,D-transpeptidase YcbB
Organism
sse
Shewanella sediminis
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sse01002
]
Ssed_2451
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sse01011
]
Ssed_2451
Peptidases and inhibitors [BR:
sse01002
]
Cysteine peptidases
Family C82
Ssed_2451
Peptidoglycan biosynthesis and degradation proteins [BR:
sse01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
Ssed_2451
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
PG_binding_1
PG_binding_3
Motif
Other DBs
NCBI-ProteinID:
ABV37060
UniProt:
A8FW37
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All DBs
Position
complement(2974857..2976254)
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AA seq
465 aa
AA seq
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MALRNLVWLICTGFLLVLYVTPVAAMDRSDAGLNSLRYQLQLVNLVRPSKQSEDSYRILR
SGTVQEKLDRVGGIQADLKYFWQNKNIPNDANRLDDTEDLYQRAISLEPTSSDYLPVSNR
LRYLLWLSEHYPWKPLVIGGWLKEGDYHKSIPEISFRLNMLGDLDSYDRNNKQLNRTLAT
SLLRFQRRHGLKQDAIIGPETLRWLNASPKNRARLLANNFLKKSSYLASLDSRFLLINIP
AFEMVLVDHDEIQLKSRVIVGKPYRQTPMLSSQISNVVLNPSWRVPRRLLWRDLLPKVRE
NGSYITQRNFDVFDAKGVIIEKSPDEWQELAQGRFPYRLVQRPGEENTLGRYKFYFANDY
NVYLHDTVDKSLFEESNRALSSGCIRVENVESLANWMASNLVRDKQTWVDMQVERQKTQW
FSLDDSLAVHLVYWTAWIDSEGDSQFRNDIYNQNSTGNLALIENR
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggcgctaagaaatcttgtttggttgatatgcaccggctttctattggttctgtatgta
actccagttgcagcaatggacagaagcgatgccgggctgaactctctacgctatcagcta
cagctagtaaacttagtcagaccaagtaagcagtctgaagattcctatcgaatattacga
agcggtacagtgcaggagaaactcgacagagtcggcggtattcaagctgacttgaaatat
ttttggcaaaataaaaatattcctaatgatgccaataggctagatgacacagaggatctt
taccaacgtgccatctctttagaacccacttcgagtgattaccttcccgttagcaataga
ctgcgttacttgctatggctaagcgagcattatccctggaaaccacttgttattggtggc
tggcttaaagagggcgattatcataaatcgatacctgagataagttttcggctcaacatg
ctaggcgatttagatagctatgacagaaacaacaagcaactgaaccgaacacttgcaact
agtttactgcgtttccagcgacgacatggtttaaagcaagatgcgataatagggcctgag
accttgagatggttgaatgcttcgcctaagaatcgagcgcgtttattagcaaacaacttc
ttaaaaaaatccagttacttagcctcattggatagtcgatttttactgattaatatcccg
gcatttgagatggtactcgttgaccatgatgagatacagctaaaatccagggtcattgtc
ggtaaaccctatcgtcaaactcccatgttgagtagtcaaatatctaatgttgttctcaac
cccagttggcgggtacccagacgcctgctttggcgagatctattacctaaggtgagagag
aatggtagctatattactcaacgaaattttgatgtgttcgatgctaaaggcgtgatcatt
gagaaaagccctgatgagtggcaagagttagcccaaggccgctttccgtatcgattggta
cagagacccggtgaagagaatacattagggcggtacaaattttactttgcaaatgactac
aatgtttaccttcatgataccgtcgacaaatctctgtttgaagagtctaacagagcgttg
tcatctggctgtattcgggtcgaaaatgtggagagcctggcaaattggatggcatcgaat
ttagtcagggataagcaaacctgggtagatatgcaagttgagaggcaaaaaacacaatgg
ttttctctcgatgactccttagccgtacatttagtatactggaccgcatggatagatagt
gaaggggactcgcaatttagaaatgatatttataaccaaaattcaacaggtaaccttgct
ttaatcgaaaatcgatag
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