Shewanella sediminis: Ssed_2522
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Entry
Ssed_2522 CDS
T00596
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sse
Shewanella sediminis
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sse03016
]
Ssed_2522
Enzymes [BR:
sse01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Ssed_2522
Transfer RNA biogenesis [BR:
sse03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Ssed_2522
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ABV37129
UniProt:
A8FWA6
LinkDB
All DBs
Position
complement(3065729..3066838)
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AA seq
369 aa
AA seq
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MLAFQYIDDDASLTELVSQYRQSTLLVLDTEFVRTRTYYARLGLIQAYDGKTLALIDPIA
VGNLSEFWSLLTEPEITTVLHSCSEDLEVFARNGQCQPIRLFDSQIAASLCGFGHGLGYA
KLVEQTLNIALDKGESRTDWMKRPLSKAQLTYAANDVYYLYELYPQLIQKLEDTDRLDWV
FEEGERMTQGRLTPPDLELAYLKVKNAFQLSSQQLAYLKVLAKWRLKKALSRDLAVGFVV
KDHALIGLAKKQPKNTNELNKMIELTDQEKRIHGRDLLALLDTADLDNPPKSIDVLALKN
GYKSSFKTIKNCLTALSEKHDVPIELLGSKRHIHEYLQWFWDGKIGDAPLLLSGWRGEIA
ASPLAELAL
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
ttgttagcgtttcaatatatagatgacgatgcgagcttaactgagcttgtatcgcaatat
cgtcagagtactttactggtcttggatactgagttcgtacgaacacgtacctattatgcc
cgacttggtttgatacaggcttacgatggtaaaacgttagcattgattgacccgattgcc
gttggcaacctgtcagagttttggagcctgctcacggagcccgaaattaccacggtattg
cactcttgcagtgaagatcttgaggtgttcgcccgtaatggacagtgtcagcccattcgt
ctgtttgatagtcagatcgcagcatcgctgtgtggtttcggtcatggactgggctatgcc
aaactggtcgaacagacactgaatatcgcgctcgataagggggagtcccgcaccgactgg
atgaagcgtccattaagtaaagctcaactgacttacgcggccaacgatgtctattacctc
tatgagctctatcctcaactgattcaaaagttagaagatacagatagactggattgggta
ttcgaggaaggcgaacggatgacgcaagggcggctaactccgccagatcttgagctggca
tatctgaaagttaagaatgcctttcagttgagttctcagcagttagcttaccttaaggtt
ttggctaaatggcgattaaagaaggcgctatcacgggatcttgccgttggatttgtggtg
aaagatcatgccttgattggccttgctaaaaaacagccgaagaatacgaatgagctgaat
aagatgatcgagctgacggatcaggagaaacgcatacatggtagagatctgttagccctg
ctcgatactgccgatcttgataatccgcctaagtcgatcgacgtgttggcgttgaagaat
ggttataaatcatcatttaagactatcaagaattgtctgacagcactgtctgaaaagcat
gatgttccgattgagttgcttggttcgaagcgacatattcatgaatatctgcaatggttc
tgggacggtaaaatcggcgatgctccgctgttgttaagcggttggcgcggtgaaattgcc
gcatcaccactggccgaattggctttgtaa
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