Shewanella sediminis: Ssed_2523
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Entry
Ssed_2523 CDS
T00596
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
sse
Shewanella sediminis
Pathway
sse00061
Fatty acid biosynthesis
sse00071
Fatty acid degradation
sse01100
Metabolic pathways
sse01212
Fatty acid metabolism
sse02024
Quorum sensing
sse04146
Peroxisome
Module
sse_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Ssed_2523
00071 Fatty acid degradation
Ssed_2523
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Ssed_2523
09145 Cellular community - prokaryotes
02024 Quorum sensing
Ssed_2523
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
sse01004
]
Ssed_2523
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sse04147
]
Ssed_2523
Enzymes [BR:
sse01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Ssed_2523
Lipid biosynthesis proteins [BR:
sse01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Ssed_2523
Exosome [BR:
sse04147
]
Exosomal proteins
Exosomal proteins of breast milk
Ssed_2523
Exosomal proteins of breast cancer cells
Ssed_2523
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Pept_S41_N
Motif
Other DBs
NCBI-ProteinID:
ABV37130
UniProt:
A8FWA7
LinkDB
All DBs
Position
complement(3066938..3068611)
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AA seq
557 aa
AA seq
DB search
MEQLWIDNLPDDVPSEIDVNQYDSLVDMFEKSVSKYADQPAFVNMGATLTYRKLEERSRA
FAAYLQNELKLVKGDRVAIMMPNLLQYPIALFGILRAGMVVVNVNPLYTPRELKHQLNDS
GAKAIVVVSNFAHTLEKVVDQTPVESVILTGLGDLLSAPKRTLVNFVVKYIKKMVPKYDL
PHAISMRKALSKGRGLQYVKPKLVSDDISFLQYTGGTTGVSKGAMLTHGNVVSNLLQADA
AYSPLLIDGKEFVVTALPLYHIFALTVNCLLFMHKGSNNLLITNPRDLPAFISELKKHPY
TAITGVNTLFNALVNTPEFAELDFSQVKLSIGGGMAVQRAVADKWQRITKNKLLEGYGLT
EAAPLVTCCPYNLEGYNGSIGFPVAMTDIQVRDDAGKVLPQGENGELFAKGPQVMKGYWQ
RPEETANVIDSQGYLATGDIGYMDENGFFFIVDRKKDMILVSGFNVFPNEVEEVVAMHPK
VVEVAAVGVPNELSGETVKVFVVQNDKSLTEQDVIAHCREHLTGYKVPKLVEFRDELPKS
NVGKILRRELRDEVKPS
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
gtggaacagctttggatagataacttacctgatgatgtaccatcggaaattgatgtaaac
cagtatgattcgcttgtcgatatgtttgagaaatcagtatcgaagtatgccgaccaacct
gcgtttgtaaatatgggcgcaacactgacttatcgtaagttggaagagcgaagccgcgca
tttgccgcctatcttcaaaatgaacttaagttagtcaaaggcgacagagtcgccatcatg
atgcctaacttattacaatatcctatcgcgctgtttggcatattacgtgccggaatggtt
gtggtgaatgtaaaccctctctataccccaagagaattgaagcaccaactgaacgattcc
ggtgcaaaagcgattgttgtcgtctctaattttgcccatacactcgagaaggtcgtcgat
cagactccagtcgagagcgtgatcctgaccgggcttggtgatcttcttagcgcgccgaaa
cgcacattagtaaactttgtcgtcaagtacatcaagaagatggtaccaaaatacgacttg
ccccatgccatctcgatgcgaaaggcattatcgaaaggcagaggtctgcaatacgttaaa
cctaaactggttagcgatgatatctcattcctgcagtataccggcgggactaccggtgta
tcgaaaggcgccatgctcacacacggcaatgtggtgagcaacctgttacaggcggacgct
gcatattcgccactgttgatcgacggtaaagagttcgtagtgactgcactgcctttgtac
catatcttcgcattaaccgtgaattgcctgttgtttatgcataaaggctccaacaaccta
cttatcactaacccaagggatctgccagcattcatcagtgagctgaaaaagcacccttat
acggcaattaccggagtaaataccctctttaatgccttggttaatacgccggagtttgcc
gagttagacttttctcaggtcaagttatccattggtggcggtatggctgtacagcgtgca
gtggccgataagtggcaaagaatcactaagaacaaactactcgaaggttacggcctgaca
gaggccgctcctctggtgacctgttgtccctataaccttgaaggttataacggttctatc
ggctttccggttgccatgactgatattcaggtgcgtgatgacgccggtaaagtcctgcct
cagggggagaacggtgaactttttgccaagggacctcaggtgatgaaaggctattggcaa
cgcccggaagagacggcaaacgttatcgatagccaaggttatctggcaacgggcgatatt
ggctatatggatgaaaatggtttctttttcattgtcgaccgtaagaaggatatgatctta
gtatcaggtttcaatgtcttccctaatgaggtggaggaggttgtggctatgcatccaaaa
gtggtcgaagttgccgccgttggagtgcctaatgagctatccggtgaaacggtgaaagtg
ttcgtggtgcaaaatgataaatctttaaccgaacaagatgtcatcgcgcattgtcgtgag
catttaacgggatataaagttcctaaactggtagaattcagagacgagctaccgaaatcg
aacgtaggtaaaattctgcgtagagagttgagggatgaagttaaacctagttaa
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