Shewanella sediminis: Ssed_2634
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Entry
Ssed_2634 CDS
T00596
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sse
Shewanella sediminis
Pathway
sse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ssed_2634
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sse03019
]
Ssed_2634
03009 Ribosome biogenesis [BR:
sse03009
]
Ssed_2634
Enzymes [BR:
sse01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Ssed_2634
Messenger RNA biogenesis [BR:
sse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Ssed_2634
Ribosome biogenesis [BR:
sse03009
]
Prokaryotic type
rRNA processing factors
Ssed_2634
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABV37241
UniProt:
A8FWL8
LinkDB
All DBs
Position
3185535..3189140
Genome browser
AA seq
1201 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GADRHGFLPLKEIAREYFPKGYSFQGRPNIKEVVKEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKAAMSELEVPQGMGLIVRTAGVGKDSAEL
KWDLKVLEHHWTAIKEASEGRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEDA
KQHVALVRPDFVDRIKQYDAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEVARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLAL
SILRLMEEEAIKENTSQIEATVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPNMTTP
DYRVVRHRKDDQISESSYKLLDQPEAKLYEPRKLERAAPPQPALKGFSAPVKEVEKPSSI
KKDVKTESKKDAEPGLISKLFSAISALFKPEEKKEEPKKKPQSNRDSQNRNNRRNTRRND
NRRNRDDKDQASDKGARNSRNKSADSAKSDKVEKQVRGKDEQAKRQSRNDSKSRRPAQES
DAESKEQPKQEVARERRQRRNMRRKVRVENEQAQVEETQVLAETPVKAAVSEEKTTRPKR
QPRKSNKPKPQQEATQEAQAATQVEAEVSDISLTETVKTETLEAKVEAKVEQTAPVAVDS
IQTTPVTDADQVEISSSEEVEVEATDDKEQREPREGQRRSRRSPRHLRAAGQRRRRDEDT
EGESSSDAAPAFVSNETEVENQANETKAASVAVSTPAQPETPEIPAEDTQKADTEVKSEA
TKPESTKPEATASVAASAPAKPAVPAKKQAPAKPKTAVKSEAMAAPAKPAAPVKAEASVA
SAAPAKPATPVKAETQVKTEASVAAAAPAKPAVQVKAEAPVKTEASVATAAPAKPVAPAK
VEASVKAEAPVKAKASVAAAAPAKPAAPVKAEAPVETEVPAKAKASVAATAPAKPAAPVE
TEVPAKTKASVAAAAPAKPAAPVKAETVVKAEAPVKAEAPVETQVSTPTEIAPQIQKAPK
AKSVSSSRFGTMVTSDMTKPVVENRENIATPSGRQYATSESTAPSEKSRTANTANSEMAK
P
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgttaattaatgcaactcaatctgaagagttgcgcgttgcccttgttgat
gggcaacaactgtacgatcttgatattgaaagtcctggtcacgaacagaaaaaagcgaac
atttacaaaggtaaaattacccgcgtagaaccctctctcgaagctgcttttgttgactat
ggtgccgatcgtcacggtttccttccattaaaagagattgccagagaatactttccaaaa
ggatactctttccaaggccgccccaacatcaaagaggtggttaaagagggtcaagaggtt
attgttcagattgataaagaagagcgaggcaacaaaggtgccgcgttaactacttttatc
agcttggcgggttcttacctggttcttatgccaaataaccctcgtgccggtggtatctcc
cgtcgaatcgaaggtgatgagcgtaccgaacttaaagcggctatgtctgaacttgaagta
cctcaaggtatgggtttaattgtccgtactgcaggtgtaggaaaagattcagccgaactt
aaatgggacctaaaagtactcgagcatcattggactgcgattaaagaagcgtctgaaggc
cgtccggctcctttcctgatccatcaggaaagtaacgtcatcgtacgtgcgattcgtgac
taccttcgtcgtgatgttggtgaagtacttatcgatcacccgcgtatttttgaagatgcc
aaacagcatgttgctttggtacgtccagactttgtcgatcgcatcaagcaatatgatgct
gaagtgccactattcactcatttccagatcgaaacacagatcgaatcggccttccagcgt
gaagttcgtcttccttccggtggctcgattgttatcgatcctactgaagccctaacctct
atcgatatcaactctgctcgagcaacgaaaggtggtgacattgaagagactgcgctgaat
accaacttagaagcggcagatgaagttgctcgccagctacgcctgcgtgatctgggtggt
ttggttgttatcgatttcatcgatatgacaccagtgcgtcatcaacgtgaagttgaaaat
agaatgcgtgatgcagtgcatcatgacagagctcgagttcaactgggtcgtatctctcgc
ttcggactcatggagatgtcaagacagcgtctacgtccatctcttgaagagtcagctgct
cacctgtgccctcgttgccatggtcaaggtacaatccgtgggacagagtctttagccctt
tctattcttcgtttgatggaagaggaagcaattaaagagaacacctctcaaattgaagct
acagttccagttgacgtagccgcattcctgcttaacgaaaagcgtaaagccattcgaatt
acagagcagcgtcatgatgttgaagtctatgtgatcccagatcctaacatgactacccct
gactaccgtgtcgtgcgtcatcgtaaagatgatcagatcagtgagtccagctataagcta
ttagaccagcccgaagcaaaactttacgagcctcgtaaacttgaacgtgctgcaccacct
caacctgcactgaaaggtttctcagcgccggttaaggaagttgaaaaaccttctagtatc
aaaaaagatgtcaaaactgagtccaaaaaagatgctgaacccggtttaatctctaagcta
ttctctgccatcagcgcgctattcaagcctgaagagaaaaaagaggaaccaaaaaagaaa
cctcagtcgaaccgcgacagtcagaaccgcaataaccgtcgtaacactcgtcgtaatgac
aatcgacgtaatcgtgatgacaaagatcaagcgagtgacaaaggcgcacgcaatagccgc
aacaagagcgcggattctgccaagtctgacaaggtagagaagcaagtcagagggaaagac
gagcaagccaagcgtcaatctcgcaatgacagtaaatctcgtcgtccggctcaggaaagc
gatgccgaatcgaaagaacagcctaagcaagaggttgccagagaacgtcgtcaacgccgt
aatatgcgtcgtaaggttcgcgttgagaatgagcaagctcaagttgaagagacccaggtt
ttagctgagactccggtaaaagctgcggtaagtgaagagaagaccacgcgtccaaagcgt
caaccaagaaagtcaaataagccaaaacctcaacaggaagcgacacaagaggctcaggct
gcaactcaggttgaagccgaagtatctgacatatcgctaaccgagacagttaaaactgag
actcttgaagcaaaagttgaagcaaaggtcgagcagactgcgccggtagccgttgattcg
attcaaacgacacctgtgacagacgccgatcaggttgaaatctcttcgtcagaagaagtt
gaagttgaagccactgatgacaaagagcagcgtgagccacgtgaaggtcaacgtcgcagc
cgtcgtagccctcgccatcttcgcgccgctggtcaacgtcgtcgtcgcgatgaagatacc
gaaggcgagtcttcatctgatgctgctccggcattcgtttcaaatgaaactgaagtagaa
aatcaagccaacgagactaaagccgcctctgtcgctgtatctactccggctcaacctgaa
acacctgagattccagctgaagatacgcaaaaagctgacactgaagttaagtctgaagcg
actaaacctgagtcaactaagccagaggctacggcatccgttgcagcatccgctccagca
aagccagccgttcctgctaaaaaacaggcaccagctaagccgaaaacagcggtaaaatct
gaagccatggctgcacccgcaaagcctgccgctccggttaaagctgaagcatctgttgcc
tcagcggcacctgctaaaccagccacaccggtgaaagctgagacccaggtgaaaactgaa
gcatcagttgccgcagcagcgccagctaaaccagcagtacaggtgaaagcagaagcccct
gtgaaaactgaagcatcagttgccacagcggcgccagctaaacccgtcgcgccagcgaaa
gttgaggcttcagtaaaagcagaagcccctgtgaaagctaaagcatctgttgctgcagct
gcacctgctaagccagccgcaccagttaaagctgaagctcctgttgaaacagaagtgcca
gctaaagccaaagcgtctgtagccgctacagcaccagctaaacctgccgctccagttgaa
acagaagtgccagctaaaaccaaagcatctgtagccgctgcagcaccagctaaacctgcc
gctcctgtaaaagcagagactgttgttaaagctgaagctcctgttaaagctgaagcgcct
gttgaaacgcaagtatcgactccgacagagatagctccacagattcaaaaagctccaaaa
gcaaaatctgtaagctcaagtcgattcggcactatggtcacctctgatatgactaagcct
gttgtagaaaaccgagaaaatattgcgacgccttcagggcgtcaatatgccacctcagaa
tctactgcacctagcgaaaaatccagaacggccaatacagcaaactcggaaatggctaaa
ccataa
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